Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq931 306 3e-78 seq1 143 2e-29 seq860 114 1e-20 seq39 104 2e-17 seq377 89.7 4e-13 seq168 84.2 2e-11 seq235 82.4 7e-11 >seq931 Length=156331669 Score = 306 bits (338), Expect = 3e-78 Identities = 525/757 (69%), Gaps = 9/757 (1%) Strand=Plus/Plus Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 || ||| || ||||| || || || || |||| || ||| || || ||||| | | Sbjct 44830140 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 44830199 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 |||||| | || | || | || ||||||||||| || || | | ||||| || Sbjct 44830200 CACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTTC 44830259 Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATC 4558 | | | ||| || | |||||||| | ||| | || | |||| || || |||||||| Sbjct 44830260 TCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATC 44830319 Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 ||| || ||||| || ||||||||||| ||||| || |||||||| | || ||||| Sbjct 44830320 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGG 44830379 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 |||| || || ||||| ||||| | ||||| || ||||||||||| ||||||||||| Sbjct 44830380 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTAC 44830439 Query 4679 GGCGGCAAACGCTACTA-ATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTA 4737 || || || ||||| | || ||| | ||| ||||||| |||||| | Sbjct 44830440 TGCAGCGAAGGCTACAACATGTTCACCATAGGTAGCCT-CTTTGTCCCCAATCCAGCGCA 44830498 Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATT 4794 | ||||| | || || ||||| || || || || || | || || || || | ||| Sbjct 44830499 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTCA-ATGGCATTGAAGAGAAATT 44830557 Query 4795 TACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAAT 4854 |||| || | | |||| || |||||||| || || || |||||||||||||||| Sbjct 44830558 CCCTTTCTTTGA---GATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAAT 44830614 Query 4855 GTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTT 4914 |||| ||||| || ||||| || || || || || || | |||||||| | |||||| Sbjct 44830615 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTA 44830674 Query 4915 CGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974 | | ||||| || || || ||||| |||||||| || ||||| |||||||| || Sbjct 44830675 TTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAA 44830734 Query 4975 CCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAAT 5034 ||| |||||| |||||||| || || || ||||| || || |||||| | | | Sbjct 44830735 CCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGGGTTCCCAGTGCCGAATGT 44830794 Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094 | || | | || || || || ||||| || || || ||||| || || ||||| Sbjct 44830795 CCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCT 44830854 Query 5095 ACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 ||| |||||| | |||| || || | |||||||| Sbjct 44830855 GCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 44830891 Score = 156 bits (172), Expect = 4e-33 Identities = 385/574 (67%), Gaps = 25/574 (4%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| | ||| || ||||| || || |||||||| ||||| || ||||| || | Sbjct 144506196 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144506137 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| | ||| || || ||||| ||||| ||||| || ||||||||||| Sbjct 144506136 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 144506077 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTT-TGTCTTT 4726 ||| ||| | |||||| ||| | || | || || | ||| | ||||||| Sbjct 144506076 GTGCTTTCCGCCAGGGCAAAGGCTGC--AT-GCAACACGTTCTCCATGGGTAATGTCTTT 144506020 Query 4727 ------AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780 |||||| || |||| || || ||||| || || || || || | || Sbjct 144506019 GTTCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAAT 144505961 Query 4781 AGCGTTAAATA---ATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTA 4836 || | || | ||| |||| || || |||| ||||| ||||| || || | Sbjct 144505960 GGCACTGAAGAGAAATTCCCTTTCTT----TGTTATCTTTAATAT--GTGTCAATAAGGA 144505907 Query 4837 GGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAG 4896 | ||| |||||||||| ||| |||||||||||||| || || || || ||||| | Sbjct 144505906 GATTATTTATTTCAGAATATATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGGAGG 144505847 Query 4897 CTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGT 4956 |||||| | |||||||| | | |||| ||| || |||||||| | || ||| || | Sbjct 144505846 TTTCTGTAATCTGAACTTCTTGAACAAATTGTTCCACGAAGTTTTCATCTATTATCCCAT 144505787 Query 4957 CACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTT 5016 ||| ||||| || || |||| || ||| |||||||| || || |||||||| || Sbjct 144505786 CACATGCTGCGAAGAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGG 144505727 Query 5017 TTTTCCAGTGGGGCAAA--TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGC 5074 || ||||| | |||| || || | | || || || | | |||| || || | Sbjct 144505726 CTTCCCAGT--GCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAAC 144505669 Query 5075 TTCCGCTTTTTTGTACATAGACCAAATATCAGGA 5108 || |||| || ||||| |||||||||| || Sbjct 144505668 CTCTACTTTCTTTTACATTTTCCAAATATCATGA 144505635 >seq1 Length=228908639 Score = 143 bits (158), Expect = 2e-29 Identities = 141/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| || |||||||| || || || |||||||||||||||||| | ||||| || ||| Sbjct 140322483 TCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCA 140322542 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931 || || || | || || || | |||||||| | |||||||| | | ||||| || Sbjct 140322543 ATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCC 140322602 Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991 || |||||||| |||||||| || ||||| |||||||| || |||| |||| | |||||| Sbjct 140322603 ACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACACGGGATATA 140322662 Query 4992 AA 4993 || Sbjct 140322663 AA 140322664 >seq860 Length=57935654 Score = 114 bits (126), Expect = 1e-20 Identities = 212/304 (70%), Gaps = 9/304 (3%) Strand=Plus/Plus Query 31766 GCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCT 31825 || || || ||||| || ||||| | | | ||||| || || || ||| || ||||| Sbjct 51797845 GCTCTTGTGAAAACGGACATTCAGACAACGCTTCCTTCTGGATGTTATGGA-GAGTAGCT 51797903 Query 31826 CCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCA 31885 || || ||||| ||||| | ||||||||| | || || || || ||||| | |||| | Sbjct 51797904 CCAAGGTCTGGCTTGGCTGCAAAACACTTTGTTGATGTAGGAGCTGGTGTCACAGATGAA 51797963 Query 31886 GACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGT 31942 || ||||||||||| ||||| |||| | ||||||||| | |||||| | | ||| Sbjct 51797964 GATTATAGAGGAAATGTTGGTGTTGTACTCTTTAATTTTTGCAAAGAAAAGT-TTGAAGT 51798022 Query 31943 ATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA--AAAATAGAAATGCCCCAAA 32000 |||||| || ||| | | || || || ||||| ||| | | ||| || ||| Sbjct 51798023 -CAAAAAAAGGTGATCGAATTGCACAGCTCATTTGTGAACGGATTTTTTAAT-CCAGAAA 51798080 Query 32001 TAGAAGTAGCTAATTATCTAGATTGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCG 32060 |||||| || | | | | ||| ||| ||||| || | ||| ||||| ||||||| Sbjct 51798081 TAGAAGAAGTTCAAGCTTTGGATGACACCAAAAGGGGTTCAGGAGGTTTTGGCTCTACCG 51798140 Query 32061 GAAA 32064 |||| Sbjct 51798141 GAAA 51798144 >seq39 Length=107640188 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| |||||||| || | |||||||| | |||| || || Sbjct 97368601 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 97368660 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || || |||||||| |||||||| || || ||||| ||| Sbjct 97368661 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 97368720 Query 4692 AC 4693 || Sbjct 97368721 AC 97368722 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| || |||||||| || || || |||||||||||||||||||| ||||| || Sbjct 97370968 GGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATG 97371027 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||||| || || || || || || | |||||||| | |||||||| | | ||||| Sbjct 97371028 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 97371085 >seq377 Length=146757320 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| ||||| || || ||||||||||||||||| || || | Sbjct 103182368 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 103182424 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| || ||||||| || || | ||||| || |||||||| || | ||| || | Sbjct 103182425 TGTGAGAGATGAAGTACTTCTCATCTGCTTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 103182484 Query 5041 TTAAATCAAC 5050 ||| || || Sbjct 103182485 ATAAGTCGAC 103182494 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 103151143 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 103151202 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 103151203 ATAAAATCAAAAGGATT 103151219 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 103176272 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 103176213 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 103176212 ATAAAATCAAAAGGATT 103176196 >seq168 Length=201391403 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/156 (72%), Gaps = 6/156 (4%) Strand=Plus/Minus Query 34294 AAAGGAAACAGCAAAAAC---ATACAAATGGTTCAGTATATTTATAAAAACACATCTTCT 34350 |||| ||||| || ||| | ||||||||| || |||||||| ||| ||||| || | Sbjct 175384057 AAAGAAAACACAAAGAACGACAAACAAATGGTCCAATATATTTACAAATACACAAGTTAT 175383998 Query 34351 TACGGAGATCCTCTAATGTTGATGAAAAGCGCTAGAAGTAACTGCTGGGATAAAACCGCT 34410 | | ||| || ||||||||||||||||||||| || || ||| |||| || Sbjct 175383997 CCTG---ACCCTATATTGTTGATGAAAAGCGCTAGAAATAGTTGTTGGTCTAAAGATGCA 175383941 Query 34411 GAGTACGGTCTTTACTCAGTATATCAAGGAGGAATA 34446 || || || || || || | |||||||| |||||| Sbjct 175383940 GAATATGGACTCTATTCCATCTATCAAGGGGGAATA 175383905 >seq235 Length=173266796 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 31802 TCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGCAGTTAAACACTTTATCGAC 31861 || ||||| || ||| || || ||| | ||||| ||||| | ||||| ||||| || Sbjct 87622159 TCTGGGTGTTATGGAAGAGTACTTCCATGGTCTGGCTTGGCTGCAAAACATTTTATTGAT 87622100 Query 31862 GTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAAT 31921 || || || ||||| |||||| | | ||||||||||| ||||| ||| |||||||| Sbjct 87622099 GTAGGAGCTGGTGTCATAGATGAAAATTATAGAGGAAATGTTGGTGTTGCACTGTTTAAT 87622040 Query 31922 TTTGG 31926 | ||| Sbjct 87622039 TCTGG 87622035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426837712801763