Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq931 403 2e-107 seq1 138 2e-27 seq39 129 8e-25 seq638 105 9e-18 seq860 84.2 3e-11 >seq931 Length=156331669 Score = 403 bits (446), Expect = 2e-107 Identities = 655/939 (70%), Gaps = 13/939 (1%) Strand=Plus/Plus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGAG---ACATAACTCC 47845 |||| |||| |||||| ||| ||| | |||| ||| |||| | || ||| |||| Sbjct 44829959 GTTCATTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTAACACCACTCT 44830018 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| | ||||| || || || | |||| || || ||||| ||| || ||| || Sbjct 44830019 CATCCTCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAAT 44830073 Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGA 47965 ||| ||| |||| |||||||| | || | ||| || |||| || | ||| Sbjct 44830074 ATTCTCCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAG 44830133 Query 47966 AATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTAT 48025 || ||||| ||||| || || || || ||| ||||| | |||||||| || || Sbjct 44830134 CATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAAT 44830193 Query 48026 AAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTAT 48085 || || || || | ||||| || || || |||||||| || ||||||| | || Sbjct 44830194 GAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAAT 44830253 Query 48086 TATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGC 48145 ||| | | || | ||||| |||| | | || ||||| ||||| || || || Sbjct 44830254 TATTTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGC 44830313 Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205 ||||||||| || | ||| |||||||| ||||| | ||| || ||||| ||||| || || Sbjct 44830314 AAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGG 44830373 Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCC 48265 ||| |||| ||||| |||||||| ||||| | || ||||| ||||||||||| ||||| Sbjct 44830374 CATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCC 44830433 Query 48266 TTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGT---GTATCCA 48322 |||||| || || || || || || || || | || || |||| ||||| Sbjct 44830434 TTCTACTGCAGCGAAGGCTACAACATGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCA 44830493 Query 48323 CCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 || |||||||| ||||||||||| ||||||||||| | ||| || ||||| ||||| Sbjct 44830494 GCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCG-TTCAATGGCATTGAAGAG 44830552 Query 48383 AAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGA 48442 ||| | |||| ||| |||||| | |||||| || || | |||||||||||||| || Sbjct 44830553 AAATTCCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGA 44830612 Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502 || || ||||| || || || || || || || ||||| | |||||||| ||||| || Sbjct 44830613 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAAC 44830672 Query 48503 CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562 | |||||| || ||||||| ||||||||||| |||||||| || ||||| || Sbjct 44830673 TATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 44830732 Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622 | | ||||| ||||||||| | || | || |||| | ||||| || Sbjct 44830733 AACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGGGTTCCCAGTGCCGAAT 44830792 Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682 || || || | || || || || | ||||| || || ||||| || || |||||||| Sbjct 44830793 GTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACAT 44830852 Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 | ||| |||||| ||| | ||| ||||| || ||||| Sbjct 44830853 CTGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 44830891 Score = 192 bits (212), Expect = 8e-44 Identities = 383/563 (68%), Gaps = 12/563 (2%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||| | ||| || | ||| ||||| || ||||| | ||| || ||||||||||| Sbjct 144506196 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144506137 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| ||||| |||| |||||||| ||||| || ||||| ||||||||||| Sbjct 144506136 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 144506077 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTC----TCTCC----GTAACTGGCTTCGT 48312 ||| ||| | ||||| || | | | | ||||| |||| || ||| || Sbjct 144506076 GTGCTTTCCGCCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAA-TGTCTTTGT 144506018 Query 48313 TGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAG 48372 | ||||| | ||||| | ||||||||||| |||| |||||| ||||| || | Sbjct 144506017 TCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACAC-AGGCATCGTTTCAATGG 144505959 Query 48373 CATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTAT 48432 || | |||||||| | |||| ||| ||||||||| || || || || | ||| ||| Sbjct 144505958 CACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAA--TATGTGTCAATAAGGAGATTAT 144505901 Query 48433 ACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG 48492 ||||| || | || ||||| || || || || || || || || || | ||||| Sbjct 144505900 TTATTTCAGAATATATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGGAGGTTTCTG 144505841 Query 48493 TGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAG 48552 | ||||| || || | |||| |||| | || || |||| || ||| ||||||| | Sbjct 144505840 TAATCTGAACTTCTTGAACAAATTGTTCCACGAAGTTTTCATCTATTATCCCATCACATG 144505781 Query 48553 CAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCC 48612 | || || || || | | ||| ||||||||| ||| | | |||| | || Sbjct 144505780 CTGCGAAGAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTCCC 144505721 Query 48613 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672 ||| || || || || | || || || | || |||| || || ||||| ||| Sbjct 144505720 AGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCTCTACTT 144505661 Query 48673 TTTTATACATATTCCATATATCA 48695 | || ||||| ||||| |||||| Sbjct 144505660 TCTTTTACATTTTCCAAATATCA 144505638 >seq1 Length=228908639 Score = 138 bits (152), Expect = 2e-27 Identities = 164/222 (74%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 48344 CTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATC 48403 |||||| |||||||| |||||| || | || |||||||| | |||| ||| ||| Sbjct 140322428 CTTCTTGACACAAGG---TGTTTCAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATC 140322484 Query 48404 TTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCAT 48463 ||| | |||||| || || | |||||||||||||| || || | ||||| || || || Sbjct 140322485 TTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAAT 140322544 Query 48464 CTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGC 48523 || || | || ||||| | |||||||| ||||| || || | |||||| || | Sbjct 140322545 TTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCAC 140322604 Query 48524 CAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGC 48565 ||| || ||||||||||| |||||||| || ||||| || || Sbjct 140322605 CAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGC 140322646 >seq39 Length=107640188 Score = 129 bits (142), Expect = 8e-25 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| |||||||||||||| |||||||| ||||| ||||| ||| Sbjct 97368601 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 97368660 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | ||| ||||| || |||||||| |||||||| || || ||||| || Sbjct 97368661 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGC 97368719 Score = 86.0 bits (94), Expect = 9e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 48391 tttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 |||| ||| |||||| | |||||| || || | ||||||||||||||| || || || | Sbjct 97370960 TTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGT 97371019 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 |||| || || || || || || || ||||| | |||||||| ||||| || || Sbjct 97371020 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 97371074 >seq638 Length=135235416 Score = 105 bits (116), Expect = 9e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | || Sbjct 3895936 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCGATGGAC 3895877 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| || |||||||| ||||| || ||||| || || | | |||||| Sbjct 3895876 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 3895817 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 3895816 TTTCTTATACCAT 3895804 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || || || ||||| |||||||| | |||||||| ||||| Sbjct 3875121 GTACCAGCATTGAAGAGAGTGGGCGAAGCATGAGTAAACCACCTCTCAGAAAGAAGATTA 3875062 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||||||| |||| || ||||| || || || || || | ||| | ||||||| Sbjct 3875061 TATGTTTCAATTGCTGCATCAATGTCTTCTTTGTGGATCCCAACAGATACTCTCATCAAC 3875002 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 ||||| || ||||||||| || Sbjct 3875001 ATATGTTGCGGTCTTTCAGCC 3874981 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| ||||||| || ||||||| || | || Sbjct 3884843 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 3884784 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| || || || | || || ||||||| || Sbjct 3884783 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 3884724 Query 78123 TCTAGATATATTGC 78136 || || || || || Sbjct 3884723 TCCAGGTAAATAGC 3884710 >seq860 Length=57935654 Score = 84.2 bits (92), Expect = 3e-11 Identities = 178/259 (69%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||| || || ||||| ||| ||| | | |||| || |||| | || ||| ||||| Sbjct 51798142 TCCGGTAGAGCCAAAACCTCCTGAAC--CCCTTTTGGTGTCATCCAAAGCTTGAACTTCT 51798085 Query 45934 TTCAGATCAGGAT-AATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATT 45992 | | || |||| || | || |||| | | || || || || |||| |||||| | || Sbjct 51798084 TCTATTTCTGGATTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCTTTTTT 51798025 Query 45993 T-ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAAT 46051 | | |||||| | ||||| | | ||| | || | || |||| | |||||||||| Sbjct 51798024 TGACTTCAAACTTTTCTTTGCAAAAATTAAAGAGTACAACACCAACATTTCCTCTATAAT 51797965 Query 46052 CTTCATCTATTACTCCCCCTCCCACATCGATA---CCTTTTAGAGACAGTCCAGATCTAG 46108 |||||||| | || || |||| ||||| | | |||| || || ||||| || | Sbjct 51797964 CTTCATCTGTGACACCAGCTCCTACATCAACAAAGTGTTTTGCAGCCAAGCCAGACCTTG 51797905 Query 46109 GAGCTATTCTTCCATAACA 46127 |||||| || ||||||||| Sbjct 51797904 GAGCTACTC-TCCATAACA 51797887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694315291731040