Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq931 403 2e-107
seq1 138 2e-27
seq39 129 8e-25
seq638 105 9e-18
seq860 84.2 3e-11
>seq931
Length=156331669
Score = 403 bits (446), Expect = 2e-107
Identities = 655/939 (70%), Gaps = 13/939 (1%)
Strand=Plus/Plus
Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGAG---ACATAACTCC 47845
|||| |||| |||||| ||| ||| | |||| ||| |||| | || ||| ||||
Sbjct 44829959 GTTCATTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTAACACCACTCT 44830018
Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905
||| | ||||| || || || | |||| || || ||||| ||| || ||| ||
Sbjct 44830019 CATCCTCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAAT 44830073
Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGA 47965
||| ||| |||| |||||||| | || | ||| || |||| || | |||
Sbjct 44830074 ATTCTCCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAG 44830133
Query 47966 AATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTAT 48025
|| ||||| ||||| || || || || ||| ||||| | |||||||| || ||
Sbjct 44830134 CATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAAT 44830193
Query 48026 AAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTAT 48085
|| || || || | ||||| || || || |||||||| || ||||||| | ||
Sbjct 44830194 GAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAAT 44830253
Query 48086 TATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGC 48145
||| | | || | ||||| |||| | | || ||||| ||||| || || ||
Sbjct 44830254 TATTTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGC 44830313
Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205
||||||||| || | ||| |||||||| ||||| | ||| || ||||| ||||| || ||
Sbjct 44830314 AAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGG 44830373
Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCC 48265
||| |||| ||||| |||||||| ||||| | || ||||| ||||||||||| |||||
Sbjct 44830374 CATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCC 44830433
Query 48266 TTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGT---GTATCCA 48322
|||||| || || || || || || || || | || || |||| |||||
Sbjct 44830434 TTCTACTGCAGCGAAGGCTACAACATGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCA 44830493
Query 48323 CCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382
|| |||||||| ||||||||||| ||||||||||| | ||| || ||||| |||||
Sbjct 44830494 GCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCG-TTCAATGGCATTGAAGAG 44830552
Query 48383 AAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGA 48442
||| | |||| ||| |||||| | |||||| || || | |||||||||||||| ||
Sbjct 44830553 AAATTCCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGA 44830612
Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502
|| || ||||| || || || || || || || ||||| | |||||||| ||||| ||
Sbjct 44830613 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAAC 44830672
Query 48503 CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562
| |||||| || ||||||| ||||||||||| |||||||| || ||||| ||
Sbjct 44830673 TATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 44830732
Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622
| | ||||| ||||||||| | || | || |||| | ||||| ||
Sbjct 44830733 AACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGGGTTCCCAGTGCCGAAT 44830792
Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682
|| || || | || || || || | ||||| || || ||||| || || ||||||||
Sbjct 44830793 GTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACAT 44830852
Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721
| ||| |||||| ||| | ||| ||||| || |||||
Sbjct 44830853 CTGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 44830891
Score = 192 bits (212), Expect = 8e-44
Identities = 383/563 (68%), Gaps = 12/563 (2%)
Strand=Plus/Minus
Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200
|| ||||| | ||| || | ||| ||||| || ||||| | ||| || |||||||||||
Sbjct 144506196 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144506137
Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260
|| ||||| ||||| |||| |||||||| ||||| || ||||| |||||||||||
Sbjct 144506136 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 144506077
Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTC----TCTCC----GTAACTGGCTTCGT 48312
||| ||| | ||||| || | | | | ||||| |||| || ||| ||
Sbjct 144506076 GTGCTTTCCGCCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAA-TGTCTTTGT 144506018
Query 48313 TGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAG 48372
| ||||| | ||||| | ||||||||||| |||| |||||| ||||| || |
Sbjct 144506017 TCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACAC-AGGCATCGTTTCAATGG 144505959
Query 48373 CATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTAT 48432
|| | |||||||| | |||| ||| ||||||||| || || || || | ||| |||
Sbjct 144505958 CACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAA--TATGTGTCAATAAGGAGATTAT 144505901
Query 48433 ACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG 48492
||||| || | || ||||| || || || || || || || || || | |||||
Sbjct 144505900 TTATTTCAGAATATATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGGAGGTTTCTG 144505841
Query 48493 TGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAG 48552
| ||||| || || | |||| |||| | || || |||| || ||| ||||||| |
Sbjct 144505840 TAATCTGAACTTCTTGAACAAATTGTTCCACGAAGTTTTCATCTATTATCCCATCACATG 144505781
Query 48553 CAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCC 48612
| || || || || | | ||| ||||||||| ||| | | |||| | ||
Sbjct 144505780 CTGCGAAGAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTCCC 144505721
Query 48613 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672
||| || || || || | || || || | || |||| || || ||||| |||
Sbjct 144505720 AGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCTCTACTT 144505661
Query 48673 TTTTATACATATTCCATATATCA 48695
| || ||||| ||||| ||||||
Sbjct 144505660 TCTTTTACATTTTCCAAATATCA 144505638
>seq1
Length=228908639
Score = 138 bits (152), Expect = 2e-27
Identities = 164/222 (74%), Gaps = 3/222 (1%)
Strand=Plus/Plus
Query 48344 CTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATC 48403
|||||| |||||||| |||||| || | || |||||||| | |||| ||| |||
Sbjct 140322428 CTTCTTGACACAAGG---TGTTTCAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATC 140322484
Query 48404 TTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCAT 48463
||| | |||||| || || | |||||||||||||| || || | ||||| || || ||
Sbjct 140322485 TTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAAT 140322544
Query 48464 CTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGC 48523
|| || | || ||||| | |||||||| ||||| || || | |||||| || |
Sbjct 140322545 TTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCAC 140322604
Query 48524 CAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGC 48565
||| || ||||||||||| |||||||| || ||||| || ||
Sbjct 140322605 CAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGC 140322646
>seq39
Length=107640188
Score = 129 bits (142), Expect = 8e-25
Identities = 100/119 (84%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|||||||| ||||| | ||| |||||||||||||| |||||||| ||||| ||||| |||
Sbjct 97368601 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 97368660
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
||||| ||||| | ||| ||||| || |||||||| |||||||| || || ||||| ||
Sbjct 97368661 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGC 97368719
Score = 86.0 bits (94), Expect = 9e-12
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 48391 tttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450
|||| ||| |||||| | |||||| || || | ||||||||||||||| || || || |
Sbjct 97370960 TTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGT 97371019
Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505
|||| || || || || || || || ||||| | |||||||| ||||| || ||
Sbjct 97371020 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 97371074
>seq638
Length=135235416
Score = 105 bits (116), Expect = 9e-18
Identities = 103/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | ||
Sbjct 3895936 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCGATGGAC 3895877
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| || |||| || |||||||| ||||| || ||||| || || | | ||||||
Sbjct 3895876 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 3895817
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 3895816 TTTCTTATACCAT 3895804
Score = 102 bits (112), Expect = 1e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| || ||||| || | || || || ||||| |||||||| | |||||||| |||||
Sbjct 3875121 GTACCAGCATTGAAGAGAGTGGGCGAAGCATGAGTAAACCACCTCTCAGAAAGAAGATTA 3875062
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518
||||||||||| |||| || ||||| || || || || || | ||| | |||||||
Sbjct 3875061 TATGTTTCAATTGCTGCATCAATGTCTTCTTTGTGGATCCCAACAGATACTCTCATCAAC 3875002
Query 78519 ATATGCTGAGGTCTTTCAACC 78539
||||| || ||||||||| ||
Sbjct 3875001 ATATGTTGCGGTCTTTCAGCC 3874981
Score = 93.3 bits (102), Expect = 6e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
||||||||||| |||||||| || ||||| ||||||| || ||||||| || | ||
Sbjct 3884843 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 3884784
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
||||| |||||||| ||||| || | ||| || || || | || || ||||||| ||
Sbjct 3884783 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 3884724
Query 78123 TCTAGATATATTGC 78136
|| || || || ||
Sbjct 3884723 TCCAGGTAAATAGC 3884710
>seq860
Length=57935654
Score = 84.2 bits (92), Expect = 3e-11
Identities = 178/259 (69%), Gaps = 10/259 (4%)
Strand=Plus/Minus
Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933
||| || || ||||| ||| ||| | | |||| || |||| | || ||| |||||
Sbjct 51798142 TCCGGTAGAGCCAAAACCTCCTGAAC--CCCTTTTGGTGTCATCCAAAGCTTGAACTTCT 51798085
Query 45934 TTCAGATCAGGAT-AATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATT 45992
| | || |||| || | || |||| | | || || || || |||| |||||| | ||
Sbjct 51798084 TCTATTTCTGGATTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCTTTTTT 51798025
Query 45993 T-ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAAT 46051
| | |||||| | ||||| | | ||| | || | || |||| | ||||||||||
Sbjct 51798024 TGACTTCAAACTTTTCTTTGCAAAAATTAAAGAGTACAACACCAACATTTCCTCTATAAT 51797965
Query 46052 CTTCATCTATTACTCCCCCTCCCACATCGATA---CCTTTTAGAGACAGTCCAGATCTAG 46108
|||||||| | || || |||| ||||| | | |||| || || ||||| || |
Sbjct 51797964 CTTCATCTGTGACACCAGCTCCTACATCAACAAAGTGTTTTGCAGCCAAGCCAGACCTTG 51797905
Query 46109 GAGCTATTCTTCCATAACA 46127
|||||| || |||||||||
Sbjct 51797904 GAGCTACTC-TCCATAACA 51797887
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694315291731040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |