Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq1 179 5e-40
seq728 129 8e-25
seq389 91.5 2e-13
>seq1
Length=228908639
Score = 179 bits (198), Expect = 5e-40
Identities = 177/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
|||||||||| ||||| |||| |||||| ||||| || ||||| || |||||||| ||
Sbjct 165981838 GTCTGGAACAACTGCTCATCACCCCATTCAGGATGCTCCTGTTTAAGCACATCGCATACT 165981897
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
||||||||||||| |||||||| ||||| |||||||| || ||||| ||||| |||||
Sbjct 165981898 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 165981957
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
|||| || || ||||| | || | | || || |||| ||||| |||||||| |
Sbjct 165981958 ACCTCCTGCCCCACAGCAAACCGTAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 165982017
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484
|||| |||||||| | ||| |||||||| || || ||||| ||||
Sbjct 165982018 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 165982066
Score = 168 bits (186), Expect = 1e-36
Identities = 231/323 (72%), Gaps = 0/323 (0%)
Strand=Plus/Plus
Query 8264 TTGAGGAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTA 8323
|||| |||||| ||| ||||| | ||| | | || ||||| ||||| ||||| |
Sbjct 165979795 TTGATGAGCTCTGGATCTGGAACACTGAATGAAGTAAAGGGACAGCCCTTCACGTTATTG 165979854
Query 8324 CAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAG 8383
|||| ||||||||||| | || | |||| ||| || ||||| ||||| || ||
Sbjct 165979855 CAGATGAGAGACTGAATTGAGGCAGTGTTGATGATTTGAAAACCCACTTCTCCACCAAAA 165979914
Query 8384 GTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAG 8443
||||| ||||||||||| | || || || || || || |||| || ||||| | ||||
Sbjct 165979915 GTGCTTGGCTTCCAGTAGGCAGGAGAACATATAACATTACCCATAAGTCCTTTCAAGGAG 165979974
Query 8444 AACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCC 8503
|| || || || | || | ||| ||||||| |||||||| | || || ||||||||
Sbjct 165979975 AATGGTGCTCCAACTTCCACCATGGTCTCACCAAAGATGGCATCTGGCCGAGGCTTTTCT 165980034
Query 8504 ACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCG 8563
|||| | | | |||||||||||||| |||| ||| || || || || | ||
Sbjct 165980035 ACCAGAAGGGCAGGATACAGCTCCACAGCATCGATGTCACCATAGAGTGCTTCCAACTCT 165980094
Query 8564 GCAGCGATCTCCTTTTCTCCTGT 8586
|||| || ||||||||||||||
Sbjct 165980095 GCAGACATTTCCTTTTCTCCTGT 165980117
Score = 116 bits (128), Expect = 5e-21
Identities = 147/202 (73%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
|||||||||||| ||||| || || ||||| || || |||||| ||| ||| | ||
Sbjct 165982993 TCTTACCCCATGGCCCAGCCCATTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 165983052
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
|||||| |||||||| || ||| |||| || |||||||| | ||| | ||||||||||||
Sbjct 165983053 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGAGCCCTGGGGATC 165983112
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828
|| |||| | || | || || ||||||||||| | | ||| || ||||
Sbjct 165983113 AGGGATGAACTTTCTTCTTAGGAGTAATTTTTCCACAATCTCATTTGAATCAGGAAGCTG 165983172
Query 9829 TGTTTTACCTGGTGAACGAGAA 9850
||||||||| || |||||
Sbjct 165983173 CTTTTTACCTGAAAAATGAGAA 165983194
Score = 104 bits (114), Expect = 3e-17
Identities = 114/152 (75%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967
||||||||||| || | ||||| || || || | ||| || ||||| || || |
Sbjct 165983606 TCACCTTTGACACCCAAGGGAGTCGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTAGTA 165983665
Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027
||||||||||| || ||||| |||||||||||| ||| | ||||| || ||||| |
Sbjct 165983666 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAGCATTGTAAGTT 165983725
Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059
|| || ||||||||||||| ||||| ||||
Sbjct 165983726 GGTGGACTGTCAATCAAATGTGATCTGGCTGA 165983757
Score = 91.5 bits (100), Expect = 2e-13
Identities = 139/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003
||||| | ||| || ||||| | ||||| ||||| || | ||||||||| || || |
Sbjct 165981244 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCC 165981303
Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061
| | ||| || |||||||||| || ||| | |||| || || | || ||| |
Sbjct 165981304 AGTAATATAGAGTTGTTGTAGATAAACTGTTGA--TAGTTGTATTTCTGGTCATGAATTT 165981361
Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121
||| | || |||| || | |||||||||||| | ||||||| || | | ||||
Sbjct 165981362 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTGTTAAATTCAGCAGCAATAC 165981421
Query 9122 GATTTTGGTACTGGAA 9137
||||||||||||||||
Sbjct 165981422 GATTTTGGTACTGGAA 165981437
>seq728
Length=90977943
Score = 129 bits (142), Expect = 8e-25
Identities = 170/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
|||||||||| || ||||| || ||||| || ||||| |||||||||||| |||| |
Sbjct 33098133 TCTTGACGATGTTAAAGCCCACCTCGCCGCCAAATGTGCTCGGCTTCCAGTACTCCGGAG 33098192
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
| |||||| ||| | | ||| || |||||||| || |||||||| | ||| | || |
Sbjct 33098193 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 33098252
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
|||| || ||||| | ||| ||| || |||||| | | | ||| | ||| | |||||
Sbjct 33098253 TCTCCCCAAAGATAGAGTTTGGATGGCACTTTTCAAGAAGCAGTCCAGGGTAGAACTCCA 33098312
Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584
|| || | |||||| || | || | || || || |||||||| ||||||
Sbjct 33098313 ACGCATCAATGTCTCCATACAATTCCTCCAACTCTGCTGCCATCTCCTTCTCTCCT 33098368
>seq389
Length=121655618
Score = 91.5 bits (100), Expect = 2e-13
Identities = 118/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| || || | |||||| || || |||||||| || ||||| || | ||| || ||
Sbjct 105715292 TCACCTATGAGGATGAGGCGGGTCGTCTGGAAAAGCTGCTCATCGCCCCAGGTGGGGTGC 105715233
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| ||||| | || ||||| | ||||| || | ||||||| ||||| |||| |
Sbjct 105715232 TCAGCCTTCAGCAGGTCACACACACGATTGTGCTCGCGTAGCCAGAGCGTGGCATACAGC 105715173
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394
||||||||||| | ||| ||||| |||| || || |||||||
Sbjct 105715172 ATGAGCCCAGGAAGCAGCCCAAACACCTCCTGGCCCACAGCCA 105715130
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/141 (74%), Gaps = 4/141 (3%)
Strand=Plus/Minus
Query 9647 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 9704
|| || |||||||| |||| | || |||||| | || || || |||| | |||
Sbjct 105713105 GTACTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTT 105713048
Query 9705 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 9764
| || |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| ||||
Sbjct 105713047 TGAAGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGG 105712988
Query 9765 GATCGGGAGTGAAGGTCCTCC 9785
| || || |||| ||||||
Sbjct 105712987 GGTCAGGTATGAACTTCCTCC 105712967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716511990357440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |