Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq64 262 4e-65 seq11 102 8e-17 >seq64 Length=156040895 Score = 262 bits (290), Expect = 4e-65 Identities = 594/884 (67%), Gaps = 18/884 (2%) Strand=Plus/Plus Query 16661 ACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCT 16720 || || ||||| || || || |||| || | | || || |||||||| || | Sbjct 44309360 ACCACTCCCATCCTCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC----- 44309414 Query 16721 AGAGATATATTCTCCATGAAATCAAAAGGATTAGTAGCT--GAAAATATTTTAGAGTACC 16778 || || ||||||||| | || ||||| || | || ||||| || | | | Sbjct 44309415 AGTGAAATATTCTCCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAA--AAC 44309472 Query 16779 CCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGT 16838 ||||||| || | ||| || || ||||| || || ||||| ||||| ||| | Sbjct 44309473 CCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAAT 44309532 Query 16839 TCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCG 16898 |||| || || || || || | || || || | ||| ||| ||||| ||| | Sbjct 44309533 TCATCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAG 44309592 Query 16899 CTTCCTTAATAATA-CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAAC 16957 | | |||| || || || || ||||| || ||| | ||| || ||||| ||| Sbjct 44309593 CATTGATAATTATTTCTCTCA-CTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAAC 44309651 Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017 |||| || || ||||| || ||||| ||||| |||||||| |||||||| || ||||| Sbjct 44309652 ATCAAGCAAGCAAAATCACAGTGTAAACCCTCTTCTCTGCTAATAAGTTCATTGGAAAAC 44309711 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 || | || |||||| |||||||||||| | ||| ||||||| || || || |||||| Sbjct 44309712 GTGAGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 44309771 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTG 17137 ||||| || || || || | ||||| || | | ||||| | || || || |||||| Sbjct 44309772 AAGAAGATGCCTTCTACTGCAGCAAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTG 44309831 Query 17138 TTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATG 17197 | | |||||| | |||| || || || | ||| | ||| ||||| ||| ||| Sbjct 44309832 TCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCG-TTCAATG 44309890 Query 17198 GCCTT--AAATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAGG 17254 || || | | || ||| |||| || | || || | || || || || || || || Sbjct 44309891 GCATTGAAGAGAAATTCCCTTT---CTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGA 44309947 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 || |||||||| || |||||||| |||||||| || || || || || || || |||||| Sbjct 44309948 CTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCT 44310007 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | || |||||| | ||||| ||| | | |||||| || | ||||| || Sbjct 44310008 TCTGTAATCTGAACTATTTGGCTAAATCGCTCCACCAAATTTTCATTTATTATGCCATCA 44310067 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || || || || ||| | ||| || |||||| | || || || | || Sbjct 44310068 CTTGCTGCAAAGAAAACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGGAT 44310127 Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494 ||||| | | || ||||| | ||||| || |||| |||||| || |||| | Sbjct 44310128 TCCCAGTGCCGAATGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCC 44310187 Query 17495 GCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||||| | |||||| | ||| ||||||| ||| | |||||||| Sbjct 44310188 GCCTTCTCATACATCTGCCAGATATCATGGTACTCGATGGGGAA 44310231 Score = 136 bits (150), Expect = 4e-27 Identities = 376/570 (66%), Gaps = 11/570 (2%) Strand=Plus/Minus Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018 |||| || || || | || ||||| ||||| || ||||| |||||||| || ||||||| Sbjct 144309697 TCAGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATG 144309638 Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078 | | || |||||| |||| ||||||| | ||| |||||| || || || ||||||| Sbjct 144309637 TGAGGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAA 144309578 Query 17079 AGAATATACCCTCGACGGATGCAAACGC--GAT--TAATCGTTCGGCGTACGTCGCGTCT 17134 |||| | | || || ||||| || || | ||||| | | || ||||| Sbjct 144309577 AGAAGGTGCTTTCCACCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCT 144309518 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 ||||| | |||||| | ||||| | || || | ||| | | | ||||||||| Sbjct 144309517 TTGTTCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACAC-AGGCATCGTTTCA 144309459 Query 17195 ATGGC-CTTAA-ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTA 17252 ||||| || || | || ||| |||| | | | | || ||| || || || || | Sbjct 144309458 ATGGCACTGAAGAGAAATTCCCTTTCT----TTGTTATCTTTAATATGTGTCAATAAGGA 144309403 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 | | | ||||| || |||||||| || || || || || || || || ||||| || Sbjct 144309402 GATTATTTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGG 144309343 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGT 17372 ||| | || |||||||| ||| ||||| | | ||||| | | || || | Sbjct 144309342 TTTCTGTAATCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCAT 144309283 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAA 17432 | | || || || || |||| ||||| || |||||| ||| || || | || Sbjct 144309282 CACATGCTGCAAAGAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGG 144309223 Query 17433 CGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 | ||||| | | || ||||| | ||||| || | || |||| ||| | || Sbjct 144309222 CTTCCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCT 144309163 Query 17493 CTGCCTTTTTATACATATTCCAAATATCAT 17522 || | || || ||||| ||||||||||||| Sbjct 144309162 CTACTTTCTTTTACATTTTCCAAATATCAT 144309133 >seq11 Length=242193529 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| ||||||||||| | || |||||| ||||||||||| Sbjct 10127221 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 10127162 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || || |||||||| || || || || | ||||| | Sbjct 10127161 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGG 10127102 Query 17106 C 17106 | Sbjct 10127101 C 10127101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517541860733040