Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq64 250 3e-61 seq22 102 8e-17 seq11 93.3 4e-14 >seq64 Length=156040895 Score = 250 bits (276), Expect = 3e-61 Identities = 594/887 (67%), Gaps = 18/887 (2%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || || | || | | || ||||||||||| |||| | Sbjct 44309363 ACTCCCATCCTCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTCAGT----- 44309417 Query 15962 GATATATTTTCCATAAAATCAAA-GGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAG 16020 || ||||| ||| |||| ||||| ||| | || || || | ||| | ||||| Sbjct 44309418 GAAATATTCTCCGTAAAGTCAAATGGGCTCTCTA-CTCCGAAAACCTTGCTAAAACCCAG 44309476 Query 16021 TTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAATTAA 16079 |||| | | ||| ||||| ||||| || || ||||| ||||| ||| |||||| | Sbjct 44309477 TTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGT-GCAATTCA 44309535 Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139 | || || || || || | || | || | |||| |||||||||| ||| || | Sbjct 44309536 TCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCAT 44309595 Query 16140 CTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTA 16199 |||| || || | || || || ||| | || |||||||| ||||| | Sbjct 44309596 TGATAATTATTTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCA 44309655 Query 16200 GACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTA 16259 || || || || || |||| || || |||||||| |||||||| |||||||| || | Sbjct 44309656 AGCAAGCAAAATCACAGTGTAAACCCTCTTCTCTGCTAATAAGTTCATTGGAAAACGTGA 44309715 Query 16260 ACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGA 16319 || ||||| |||||||||||| | ||||||||||| ||||| || || ||||||| Sbjct 44309716 GGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGA 44309775 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379 | || || || || | ||||| || | | ||||| | || ||||| ||||| | | Sbjct 44309776 AGATGCCTTCTACTGCAGCAAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCC 44309835 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 |||||| | |||| || || || | || | |||| ||||| ||| ||||| | Sbjct 44309836 CAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCG-TTCAATGGCAT 44309894 Query 16440 T--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497 | | | || ||| | |||| | ||| | || || || ||||| || | ||| || Sbjct 44309895 TGAAGAGAAATTCCC--TTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATA 44309952 Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557 |||||| || |||||||| || ||||| || || || |||||||| || || || || | Sbjct 44309953 CATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGT 44310012 Query 16558 TATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 || || ||| | |||||| ||| ||| || ||||| | || || |||||||| Sbjct 44310013 AATCTGAACTATTTGGCTAAATCGCTCCACCAAATTTTCATTTATTATGCCATCACTTGC 44310072 Query 16618 AGCAA--AAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGC 16675 |||| ||||| || ||| | | || |||||| | || || | | || | | Sbjct 44310073 TGCAAAGAAAACCAGAACATGGGAT--ATAAAATATCTCTCCTCGGGCTTCAGGGATTCC 44310130 Query 16676 CAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCC 16735 || | | || ||||| | ||||| || || | ||||| ||| |||| | ||| Sbjct 44310131 CAGTGCCGAATGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCC 44310190 Query 16736 TTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 || | |||||| | ||| ||||||| ||| | ||||| || | ||| Sbjct 44310191 TTCTCATACATCTGCCAGATATCATGGTACTCGATGGGGAAGATGAC 44310237 Score = 149 bits (164), Expect = 6e-31 Identities = 382/570 (67%), Gaps = 15/570 (3%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || |||| || |||| || || || ||||| |||||||| |||||||| || Sbjct 144309695 AGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTG 144309636 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| |||| ||||||| | |||||||||| ||||| || || |||||| Sbjct 144309635 AGGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAG 144309576 Query 16319 AATATACCCTCAACAGATGCAAAAGCG--ATTAATC--GTTCCGCGTACGTAGCATCTTT 16374 || | | || || ||||| || || | | |||| | | ||| | ||||| Sbjct 144309575 AAGGTGCTTTCCACCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTT 144309516 Query 16375 ATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTAT 16434 || | |||||| | ||||| | || || | || | ||| | |||||||| || Sbjct 144309515 GTTCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACAGGC-ATCGTTTCAAT 144309457 Query 16435 GGC-CTTAA-ACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAA 16492 ||| || || | || ||| |||| | || |||| | |||| || ||||| || | | Sbjct 144309456 GGCACTGAAGAGAAATTCCCTTTCTT-TGT-TATCTTTAATAT--GTGTCAATAAGGAGA 144309401 Query 16493 CTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCC 16552 | | ||||| || |||||||| ||||| || || || || ||||||||||| | Sbjct 144309400 TTATTTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTT 144309341 Query 16553 TCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCA 16612 || | || || ||||| |||| ||||| ||| ||| |||| | || || ||| Sbjct 144309340 TCTGTAATCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCA 144309281 Query 16613 CTTGCAGCAAAAAACGCC--AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAA 16670 | ||| ||||| || ||| |||||| | | || |||||| ||| |||| | || Sbjct 144309280 CATGCTGCAAAGAAAGCCAGAATATGGGAT--ATAAAATATCTTTACTCAGGCTTCAGGG 144309223 Query 16671 TATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCA 16730 | ||| | | || ||||| | ||||| || | | | |||| || | || Sbjct 144309222 CTTCCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCT 144309163 Query 16731 CTGCCTTTTTATACATTTTCCAAATATCAT 16760 || | || || ||||||||||||||||||| Sbjct 144309162 CTACTTTCTTTTACATTTTCCAAATATCAT 144309133 >seq22 Length=145138636 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | |||||||| |||| |||| Sbjct 102218813 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 102218872 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| | || || |||| ||||| | Sbjct 102218873 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 102218932 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 102218933 CCACCACTCTTTCC 102218946 >seq11 Length=242193529 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| || ||||| || | || ||||| |||||||||||| Sbjct 10127219 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10127160 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 10127159 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGC 10127101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511410705030960