Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq44 100 2e-16 seq20 100 2e-16 seq1 86.0 5e-12 seq64 84.2 2e-11 >seq44 Length=90338345 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 61055917 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 61055858 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || ||| | | || | ||| || || | ||| ||||| | || ||| Sbjct 61055857 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGGTAAGGAAGGAATTCCTCCTGAT 61055798 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || || ||||| |||||||| ||||| || ||||||||| ||| || | || ||| Sbjct 61055797 CAGCAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTAC 61055738 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||||| ||||| ||||||||||| | ||||| Sbjct 61055737 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 61055703 >seq20 Length=170805979 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | ||||| | |||| || ||||| ||| ||| | |||||| Sbjct 113581498 AAAATGCAGATTTTCTTGAAAACCCTTACGGAGAAGACCATCACCCTCGAGGCTGAACCC 113581557 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 || ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 113581558 TTGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 113581617 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||||| |||||||| || || |||||||||||| ||| || | || ||| Sbjct 113581618 CAGCAAAGACTGATCTTTGCTGGAAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 113581677 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 | |||||| ||||| ||||||||||| | ||||| Sbjct 113581678 AGTATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 113581712 >seq1 Length=248956422 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | ||||| | | ||| || ||||| ||| ||| |||| | Sbjct 192716180 AAAATGCAGATTTTCGTGAAAACCCTTATGGGGAAGACCATCACCCTCGAGGTTGAACTC 192716239 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | || | ||| || || ||||| ||||| | || ||| Sbjct 192716240 TCGGATACAATAGATAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 192716299 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || || ||||| |||||||| ||||| || |||||||| ||| || | || ||| Sbjct 192716300 CAGCAGAGACTGATCTTTGCTGGCAAGCAGTTGGAAGATGGACGTACTTTGTCTGACTAC 192716359 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||||| ||||| ||||||||||| | ||||| Sbjct 192716360 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 192716394 >seq64 Length=156040895 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 ||| |||| || ||| | ||||| | | ||| || ||||| ||| || |||||| Sbjct 3717146 AAACTGCAGATTTTCGTGAAAACCCTAAGGGGGAAGACCATCACCCTTGAGGTTGAACCC 3717205 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| || | | || | ||| || || ||||| ||||| | || ||| Sbjct 3717206 TCAGATGCGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 3717265 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||||| |||||||| ||||| |||||||||||| ||| || | || | | Sbjct 3717266 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTGC 3717325 Query 29139 AATATTCAGAAGGAATCTACTCTTCA 29164 || ||||| ||||| |||||||||| Sbjct 3717326 AACATTCAAAAGGAGCCTACTCTTCA 3717351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428332982640590