Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq14 250 3e-61 seq1 163 3e-35 seq50 159 4e-34 >seq14 Length=198295559 Score = 250 bits (276), Expect = 3e-61 Identities = 614/917 (67%), Gaps = 27/917 (3%) Strand=Plus/Plus Query 9460 GCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGT-TGTTGGGCAATAT 9518 || ||| | || ||| | ||||| || ||||| | || |||| | ||||||||| | Sbjct 46265258 GCCCAGTTTGTGCCCCCGCTGTACTCCCTGGTGTT-CACTGTGGGCCTCTTGGGCAATGT 46265316 Query 9519 CTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACT 9578 | |||||||| || |||||| ||||| || | || || | || ||||| | || Sbjct 46265317 GGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACCT 46265376 Query 9579 GTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTA 9638 | | ||| |||| || || ||| |||| || || | || | ||||| ||||| ||||| Sbjct 46265377 GCTCAACCTGGCCATTTCGGACCTGCTCTTCCTCGTCACCCTTCCATTCTGGATCCACTA 46265436 Query 9639 TATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTC--AGGGGT 9696 | | | | ||| | ||| |||||| | | ||||||| || ||| |||| | Sbjct 46265437 TGTCAGGGGG---CATAACTGGGTTTTTGGCCATGGCATGTGTAAGCTCCTCTCAGGGTT 46265493 Query 9697 GTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGG 9756 | | ||| | |||||||| || |||||| ||| |||||||| ||| | |||||| Sbjct 46265494 TTATCACACAGGCT--TGTACAGCGAGATCTTTTTCATAATCCTGCTGACAATCGACAGG 46265551 Query 9757 TATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCA 9814 || || || ||||| ||||||| ||| || ||| | || || || | ||| Sbjct 46265552 TACCTGGCCATTGTCCATGCTGTGTTTGCCCTTCGAGCCC--GGACTGTCACTTTTGGTG 46265609 Query 9815 TAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCT 9874 | | ||| | | |||||| ||||||| | | | || ||||||||| ||| Sbjct 46265610 TCATCACCAGCATCGTCACCTGGGGCCTGGCAGTGCTAGCAGCTCTTCCTGAATTTATCT 46265669 Query 9875 TTCATGGACACC-AAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGAT 9932 | ||| | || |||| | | | || | || || | || ||||||||| Sbjct 46265670 TCTATG-AGACTGAAGA-GTTGTTTGAAGAGACTCTTTGCAGTGCTCTTTACCCAGAGGA 46265727 Query 9933 GTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTT 9992 | | || ||||||| |||| | | ||| || || ||||| || | Sbjct 46265728 TACAGTATATAGCTGGAGGCATTTCCACACTCTGAGAATGACCATCTTCTGTCTCGTTCT 46265787 Query 9993 GCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCC 10052 ||||||||| ||||||| |||||||| | ||| |||| || ||| ||||| |||| Sbjct 46265788 CCCTCTGCTCGTTATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTGAGGTGCCC 46265847 Query 10053 CAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGT 10112 ||| || || ||||||||||||||| ||||||| ||||||||||||| || | ||| | Sbjct 46265848 CAGTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCGGTGTTTTTCAT 46265907 Query 10113 TTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTA- 10171 ||| |||||||||||||| | | | |||| || ||| ||| ||| | || ||||| Sbjct 46265908 TTTCTGGACACCCTACAATGTGGCTATCCTTCTCTCTTCCTATCA----ATCCATCTTAT 46265963 Query 10172 ----ACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACA 10227 | || | |||| ||||| | ||||| ||| ||||| | ||| | Sbjct 46265964 TTGGAAATG-ACTGTGAGCGGAGCAAGCATCTGGACCTGGTCATGCTGGTGACAGAGGTG 46266022 Query 10228 GTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTT 10287 | |||||| | ||||| ||||| ||||| ||||||||||| || || || |||| ||| Sbjct 46266023 ATCGCCTACTCCCACTGCTGCATGAACCCGGTGATCTACGCCTTTGTTGGAGAGAGGTTC 46266082 Query 10288 AGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATC 10347 | | ||||| |||||||||||||| || || ||| |||| ||| |||||| Sbjct 46266083 CGGAAGTACCTGCGCCACTTCTTCCACAGGCACTTGCTCATGCACCTGGGCAGATACATC 46266142 Query 10348 CCCTTCCTGTCTGGTGA 10364 || ||||| || |||| Sbjct 46266143 CCATTCCTTCCTAGTGA 46266159 Score = 250 bits (276), Expect = 3e-61 Identities = 614/917 (67%), Gaps = 27/917 (3%) Strand=Plus/Plus Query 176346 GCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGT-TGTTGGGCAATAT 176404 || ||| | || ||| | ||||| || ||||| | || |||| | ||||||||| | Sbjct 46265258 GCCCAGTTTGTGCCCCCGCTGTACTCCCTGGTGTT-CACTGTGGGCCTCTTGGGCAATGT 46265316 Query 176405 CTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACT 176464 | |||||||| || |||||| ||||| || | || || | || ||||| | || Sbjct 46265317 GGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACCT 46265376 Query 176465 GTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTA 176524 | | ||| |||| || || ||| |||| || || | || | ||||| ||||| ||||| Sbjct 46265377 GCTCAACCTGGCCATTTCGGACCTGCTCTTCCTCGTCACCCTTCCATTCTGGATCCACTA 46265436 Query 176525 TATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTC--AGGGGT 176582 | | | | ||| | ||| |||||| | | ||||||| || ||| |||| | Sbjct 46265437 TGTCAGGGGG---CATAACTGGGTTTTTGGCCATGGCATGTGTAAGCTCCTCTCAGGGTT 46265493 Query 176583 GTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGG 176642 | | ||| | |||||||| || |||||| ||| |||||||| ||| | |||||| Sbjct 46265494 TTATCACACAGGCT--TGTACAGCGAGATCTTTTTCATAATCCTGCTGACAATCGACAGG 46265551 Query 176643 TATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCA 176700 || || || ||||| ||||||| ||| || ||| | || || || | ||| Sbjct 46265552 TACCTGGCCATTGTCCATGCTGTGTTTGCCCTTCGAGCCC--GGACTGTCACTTTTGGTG 46265609 Query 176701 TAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCT 176760 | | ||| | | |||||| ||||||| | | | || ||||||||| ||| Sbjct 46265610 TCATCACCAGCATCGTCACCTGGGGCCTGGCAGTGCTAGCAGCTCTTCCTGAATTTATCT 46265669 Query 176761 TTCATGGACACC-AAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGAT 176818 | ||| | || |||| | | | || | || || | || ||||||||| Sbjct 46265670 TCTATG-AGACTGAAGA-GTTGTTTGAAGAGACTCTTTGCAGTGCTCTTTACCCAGAGGA 46265727 Query 176819 GTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTT 176878 | | || ||||||| |||| | | ||| || || ||||| || | Sbjct 46265728 TACAGTATATAGCTGGAGGCATTTCCACACTCTGAGAATGACCATCTTCTGTCTCGTTCT 46265787 Query 176879 GCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCC 176938 ||||||||| ||||||| |||||||| | ||| |||| || ||| ||||| |||| Sbjct 46265788 CCCTCTGCTCGTTATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTGAGGTGCCC 46265847 Query 176939 CAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGT 176998 ||| || || ||||||||||||||| ||||||| ||||||||||||| || | ||| | Sbjct 46265848 CAGTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCGGTGTTTTTCAT 46265907 Query 176999 TTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTA- 177057 ||| |||||||||||||| | | | |||| || ||| ||| ||| | || ||||| Sbjct 46265908 TTTCTGGACACCCTACAATGTGGCTATCCTTCTCTCTTCCTATCA----ATCCATCTTAT 46265963 Query 177058 ----ACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACA 177113 | || | |||| ||||| | ||||| ||| ||||| | ||| | Sbjct 46265964 TTGGAAATG-ACTGTGAGCGGAGCAAGCATCTGGACCTGGTCATGCTGGTGACAGAGGTG 46266022 Query 177114 GTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTT 177173 | |||||| | ||||| ||||| ||||| ||||||||||| || || || |||| ||| Sbjct 46266023 ATCGCCTACTCCCACTGCTGCATGAACCCGGTGATCTACGCCTTTGTTGGAGAGAGGTTC 46266082 Query 177174 AGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATC 177233 | | ||||| |||||||||||||| || || ||| |||| ||| |||||| Sbjct 46266083 CGGAAGTACCTGCGCCACTTCTTCCACAGGCACTTGCTCATGCACCTGGGCAGATACATC 46266142 Query 177234 CCCTTCCTGTCTGGTGA 177250 || ||||| || |||| Sbjct 46266143 CCATTCCTTCCTAGTGA 46266159 Score = 86.0 bits (94), Expect = 7e-12 Identities = 219/327 (67%), Gaps = 15/327 (5%) Strand=Plus/Minus Query 176358 CCCGCCCTGTATCTGCTTG-TGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGT--- 176413 ||| | ||||| || |||| | ||| || |||| || | || || ||| | ||||| Sbjct 46204202 CCCCCTCTGTA-CTCCTTGGTATTTGTCATTGGCCTGGTTGGAAACATCCTGGTGGTCCT 46204144 Query 176414 GATTATTGT-CATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACT 176472 | | |||| || ||||| || | | |||||| | || | ||| | || | ||| Sbjct 46204143 GGTCCTTGTGCA----ATACAAGAGGCTAAAAAACATGACCAGCATCTACCTCCTGAACC 46204088 Query 176473 TGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATAT-TGGA 176531 |||| || |||||| |||| || || || || | || || ||||| |||| | | || Sbjct 46204087 TGGCCATTTCTGACCTGCTCTTCCTGTTCACGCTTCCCTTCTGGATCGACTACAAGTTGA 46204028 Query 176532 ATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTAC 176591 | | |||| ||| ||||||| | || ||||||| | ||| || | | |||| Sbjct 46204027 AGG----ATGACTGGGTTTTTGGTGATGCCATGTGTAAGATCCTCTCTGGGTTTTATTAC 46203972 Query 176592 ATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCT 176651 | |||||||| || |||||| |||||||||||| || | |||||||| || || Sbjct 46203971 ACAGGCTTGTACAGCGAGATCTTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCC 46203912 Query 176652 GTTGTCTATGCTGTAACTGCTTTGAGG 176678 | ||| | || || ||| ||| || Sbjct 46203911 ATCGTCCACGCCGTGTTTGCCTTGCGG 46203885 Score = 86.0 bits (94), Expect = 7e-12 Identities = 219/327 (67%), Gaps = 15/327 (5%) Strand=Plus/Minus Query 9472 CCCGCCCTGTATCTGCTTG-TGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGT--- 9527 ||| | ||||| || |||| | ||| || |||| || | || || ||| | ||||| Sbjct 46204202 CCCCCTCTGTA-CTCCTTGGTATTTGTCATTGGCCTGGTTGGAAACATCCTGGTGGTCCT 46204144 Query 9528 GATTATTGT-CATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACT 9586 | | |||| || ||||| || | | |||||| | || | ||| | || | ||| Sbjct 46204143 GGTCCTTGTGCA----ATACAAGAGGCTAAAAAACATGACCAGCATCTACCTCCTGAACC 46204088 Query 9587 TGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATAT-TGGA 9645 |||| || |||||| |||| || || || || | || || ||||| |||| | | || Sbjct 46204087 TGGCCATTTCTGACCTGCTCTTCCTGTTCACGCTTCCCTTCTGGATCGACTACAAGTTGA 46204028 Query 9646 ATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTAC 9705 | | |||| ||| ||||||| | || ||||||| | ||| || | | |||| Sbjct 46204027 AGG----ATGACTGGGTTTTTGGTGATGCCATGTGTAAGATCCTCTCTGGGTTTTATTAC 46203972 Query 9706 ATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCT 9765 | |||||||| || |||||| |||||||||||| || | |||||||| || || Sbjct 46203971 ACAGGCTTGTACAGCGAGATCTTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCC 46203912 Query 9766 GTTGTCTATGCTGTAACTGCTTTGAGG 9792 | ||| | || || ||| ||| || Sbjct 46203911 ATCGTCCACGCCGTGTTTGCCTTGCGG 46203885 >seq1 Length=248956422 Score = 163 bits (180), Expect = 3e-35 Identities = 134/159 (84%), Gaps = 7/159 (4%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||| ||||||| ||||||||| || || || ||||||||||||||||| | || Sbjct 206770908 CAGCGCCGTAGCCTCAGCCTGAGGGTCTTCAGGTTCTCCCCCAGGGAGTTCACATGCGCC 206770967 Query 138142 TT--TTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACT 138199 || | |||| || || |||||||| || |||||||||||||||||||||||||||| Sbjct 206770968 TTGATGTCTGG---GT-CT-TGGTTCTCAGCTTGGGGCATCACCTCCTCCAGGTAAAACT 206771022 Query 138200 GGATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||||||||||| ||| ||||| ||||||||||||| Sbjct 206771023 GGATCATCTCAGACAAGGCTTGGCAACCCAGGTAACCCT 206771061 Score = 111 bits (122), Expect = 2e-19 Identities = 82/96 (85%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 137921 CTCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACT 137980 |||||||| ||||| | ||||||||||| ||||||||||| |||||||||||||||| Sbjct 206768635 CTCAGTTTCGTATCTTCATTGTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACT 206768694 Query 137981 CGCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 | |||||||| ||||||| ||||| || ||||||| Sbjct 206768695 CACTCATGGCTTTGTAGATGCCTTTCTCTTGGAGCT 206768730 >seq50 Length=80373285 Score = 159 bits (176), Expect = 4e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| ||| || | |||||| || ||||||| ||||||||| |||||||| ||| Sbjct 670863 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 670804 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || |||||||| ||||| | |||||||||||||||||| ||||| | | | || Sbjct 670803 ACACCGAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 670744 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||||||||| ||| ||||| || ||||| ||||| Sbjct 670743 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 670703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590072536695120