Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq64 495 4e-135 seq53 428 5e-115 seq14 324 2e-83 seq20 120 4e-22 >seq64 Length=156040895 Score = 495 bits (548), Expect = 4e-135 Identities = 462/587 (79%), Gaps = 0/587 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||||||| ||||| ||||||||||||| Sbjct 13378760 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCGT 13378819 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 | |||| ||||||| ||||||| ||||||||| |||||| |||| || |||||||| Sbjct 13378820 AGGGGCACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCTAGGCAACATCGTTGCGA 13378879 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| ||||||| ||||||| ||| |||| | ||||||||| Sbjct 13378880 CACACCGGAGACCAGGTGATGAGCTTGGGGTCGGTCATAAGCGCAGTGGCGTCGTCGCTG 13378939 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||||||||| || |||||||| ||||| | || |||| |||||||| ||| Sbjct 13378940 GGGGCTGGCAGGGCCTCCCGCAGGAAGGCAAAGAGAGTGTGCGCCCCCGCACCGTTCACC 13378999 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||| ||||||||||||||| ||||| |||||||| || ||||| ||||||| ||| Sbjct 13379000 TCGCCCTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCACCACCAGGTCGGACGTACTTG 13379059 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 |||||| || ||||| | |||| |||||| ||||| || || |||||||| |||||| Sbjct 13379060 AGGGAATTCAGAATCTCTTCGTTCTTGGCGTTCTCCTGATGCCCAAACTGGTTGCACGGG 13379119 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 || || ||||| ||||| ||||| | ||| |||||||||||||||||||||||||| ||| Sbjct 13379120 AAGCCGAGCACCACCAGGCCCCGGGGTCCGAGGCGCCGCTGCAGCTCGTTCATCTGGGTG 13379179 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536 || |||||||||||| |||||||||||||| || ||||| || || | ||| || | Sbjct 13379180 TAGTCCCGGACCGTGGAGCCTCAGAGGGACGCCACATTCTCTATAAGTAGTACCTTGCAC 13379239 Query 83537 CGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTAC 83596 || | | |||| | ||||||||| || || |||| | |||||| || |||||||| ||| Sbjct 13379240 CGCAGGGAGCCCAGGCTCACAGGCTCCCCGCCGGCCAGCGGGCGCGCCGAGAAGGCATAC 13379299 Query 83597 ACAGATCTGGTCTCTGCCGCGGCAAGCTGTGCCGCGTACTTGGCACA 83643 || || || | | ||||| || || | || || || |||| || Sbjct 13379300 ACCGACTGGGCCGCCGCCGCCGCTGGCCGAGCAGCACACATGGCGCA 13379346 >seq53 Length=46709983 Score = 428 bits (474), Expect = 5e-115 Identities = 443/573 (77%), Gaps = 9/573 (2%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||||||| ||||| ||| ||||||| Sbjct 27143369 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCAGCTATACCTGCAT 27143428 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTC---GAAGTTCCAGGCCACGTCGTTG 83173 || ||| ||||||| ||||||| ||||||||| |||||||||||| || |||||| Sbjct 27143429 ACAGGCACACCGTCAGGGCCCACCAGGAACTTCTCAAAGAAGTTCCAGGCAACATCGTTG 27143488 Query 83174 CGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCG 83233 || ||||| |||||||||| ||||||| ||||||| ||| |||| | |||||| Sbjct 27143489 CGACACACCGGAGACCAGGTGATGAGCTTGGGGTCGGTCATGAGCTCAGTGGCGTCGTCC 27143548 Query 83234 CTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTG 83293 || || || ||| || | || || || |||||| |||| || || |||| |||||||| Sbjct 27143549 CTGGGGGCTGGCCGG-CGTCCCGCAGAAAGGCGGAGAGAGGGTGCGCCCCCGCACCGTTC 27143607 Query 83294 ACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGC 83353 |||||||||||||| |||||||| ||| | |||||||| || ||||| |||||| | Sbjct 27143608 ACCTCGCACTTCTCCAAGAGCATGAAGCTGGGCTCGAACCCACCACCAGGTTGGACGTAC 27143667 Query 83354 TTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACAC 83413 || |||||| || ||||| | |||| |||||| ||||| || || ||||||| ||| Sbjct 27143668 TTGAGGGAATTCAGAATCTCTTCGTTCTTGGCGTTCTCCTGATGCCCAGACTGGTTGCAC 27143727 Query 83414 GGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGA 83473 ||||| |||||||| ||||| ||||| | || |||||||||||| ||||||||||||| Sbjct 27143728 GGGAAGCCAAGCACCACCAGGCCCCG-GGGCCGAGGCGCCGCTGCGGCTCGTTCATCTGG 27143786 Query 83474 GTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGG 83533 ||||| |||||||||||| | |||| ||||||||| || |||||||| || | || | Sbjct 27143787 GTGTAGTCCCGGACCGTGGTGCCTCCGAGGGACGCCACATTCTCGATAAGTAGTCCCTTG 27143846 Query 83534 CCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGG--GCGTGCTGAGAAGG 83591 ||||| | | |||| | ||||||||| || || |||| | ||| ||| || || |||| Sbjct 27143847 CCCCGCAGGGAGCCCAGGCTCACAGGCTCCCCGCCGGCCAGCGGGCGCGCGCGGAAAAGG 27143906 Query 83592 CGTACACAGATCTGGTC-TCTGCCGCGGCAAGC 83623 | ||||| || |||| | | ||||| || ||| Sbjct 27143907 CTTACACCGA-CTGGGCAGCCGCCGCCGCTAGC 27143938 >seq14 Length=198295559 Score = 324 bits (358), Expect = 2e-83 Identities = 274/337 (81%), Gaps = 0/337 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||||||| ||||| ||||||||||||| Sbjct 49357413 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCGT 49357472 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 | |||| ||||||| ||||||| ||||||||| ||||||||||| || |||||||| Sbjct 49357473 AGGGGCACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCAACATCGTTGCGA 49357532 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| ||||||| ||||||| ||| |||| | | ||||||||| Sbjct 49357533 CACACCGGAGACCAGGTGATGAGCTTGGGGTCGGTCATAAGCGCGGTGGCGTCGTCGCTG 49357592 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||||||||| || |||||||||||||| || || |||| |||||||| ||| Sbjct 49357593 GGAGCTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGTGCGCCCCCGCACCGTTCACC 49357652 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||||| ||||| |||||||| || ||||| ||||||| ||| Sbjct 49357653 TCGCACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCACCACCAGGCCGGACGTACTTG 49357712 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 |||||| || ||||| | |||| |||||| |||| Sbjct 49357713 AGGGAATTCAGAATCTCTTCGTTCTTGGCGTTCTCCT 49357749 Score = 210 bits (232), Expect = 3e-49 Identities = 177/216 (82%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | ||| |||| Sbjct 49358026 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACCACCAGGCCCCGGGGTCCGAGGC 49358085 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||| | Sbjct 49358086 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTGGTGCCTCAGAGGGACGCCA 49358145 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | |||||||| || | ||| |||||| | | |||| | ||||||||| || || |||| Sbjct 49358146 CATTCTCGATAAGTAGTACCTTGCCCCGCAGGGAGCCCAGGCTCACAGGCTCCCCGCCGG 49358205 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGG 83606 | |||||| || |||||||| ||||| || |||| Sbjct 49358206 CCAGCGGGCGCGCCGAGAAGGCATACACCGA-CTGG 49358240 >seq20 Length=170805979 Score = 120 bits (132), Expect = 4e-22 Identities = 206/291 (71%), Gaps = 15/291 (5%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| || |||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 107069517 GCAGCTACGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 107069459 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 107069458 TGGTGCACCTGTTCCCCGAGCTCTTCACGCACGAGAACCTGCGCAAGCAGTACAACTGCA 107069399 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || ||||| ||| | | |||| ||||| Sbjct 107069398 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCCTCCCGCATCAAGCTCATCCGCCACTAC 107069340 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGC----AACGAGCGCGTGTGGATCACAAAGTTCCT 50643 |||||| |||| |||| ||||| ||||| ||||| |||| | ||||| | Sbjct 107069339 GTGCAGCTGCTCTACCCA----CGCGCCAAAAACGACCGCGTCTGGACCCTGGAGTTCGT 107069284 Query 50644 GGCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 || ||||| ||||||||||||||||| | |||||| || |||||| Sbjct 107069283 GGGCAAACTGGATGAGCGCTGCCGGCGCCG--GGACACGGAGCAAAGGCGC 107069235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608792401443120