Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq20 102 1e-16 seq1 98.7 1e-15 seq65 95.1 2e-14 seq46 95.1 2e-14 seq51 93.3 6e-14 seq18 89.7 8e-13 seq21 86.0 9e-12 seq44 84.2 3e-11 >seq20 Length=170805979 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||| | || || || Sbjct 113581727 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATACTGTAGTCAGA 113581669 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| ||||||||||| |||| |||||||||||| ||||| Sbjct 113581668 CAAAGTACATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 113581609 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 113581608 AATTCCTTCCTTATCCTG 113581591 >seq1 Length=248956422 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 192716409 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 192716351 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || || || || |||||||| |||| ||| |||||||| ||||| Sbjct 192716350 CAAAGTACGTCCATCTTCCAACTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 192716291 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 192716290 AATTCCTTCCTTATCCTG 192716273 >seq65 Length=57227415 Score = 95.1 bits (104), Expect = 2e-14 Identities = 221/318 (69%), Gaps = 29/318 (9%) Strand=Plus/Minus Query 112502 ATATATTTTAAATCGAATACTTTAAATGATATTTTATATAAATTATGTTCTGAAGATATT 112561 |||||||||| || ||| |||| || |||||||||||| ||| || | | ||| Sbjct 18871667 ATATATTTTATAT---ATATTTTATAT---ATTTTATATAAA-TATATTTTTATATAATT 18871615 Query 112562 ATA-ATTCCCGATGA-TAGttatataaataatttaaat----tataatgatatgtttata 112615 ||| ||| || | || ||| || ||| | || || |||||| |||| |||||| Sbjct 18871614 ATATATTTTATATAATTATATATTTATATATTATATATTTTATATAATTATATATTTATA 18871555 Query 112616 tctgaaataatgggatttaa-taaaattatgagacaatttatagaattatttaaaagaaa 112674 | | | || || || ||| || |||||| | | |||||| |||||| | | | | Sbjct 18871554 TATTATAT-ATTTTATATAATTATAATTAT---ATATTTTATATAATTATATTATATATT 18871499 Query 112675 tatttattatataagaaagaatatattattatttgttattataaattttattttatct-a 112733 ||||||||||||| | | |||||| |||| | ||| |||||| | |||||||| | | Sbjct 18871498 TATTTATTATATACAATATTATATATAATTA-TAATTA-TATAAAATATATTTTATATAA 18871441 Query 112734 tattaattgtttatgtgggtattgtatatattaaaaagtatgaaaatttatatttatata 112793 | ||||| | ||| ||||||||||| | | || ||| || || |||||||| Sbjct 18871440 TTATAATTATATAT---TATATTGTATATAATTATAATTAT----ATATAATTTTATATA 18871388 Query 112794 atttTGTA-ATCATAAAT 112810 || || || || |||||| Sbjct 18871387 ATCTTATATATAATAAAT 18871370 >seq46 Length=83257441 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| || || ||||| | |||||| ||||| ||||| || | || Sbjct 10258988 CCACCACGCAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGAC 10258929 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | ||| || |||||||| ||| |||||||||||| |||||| Sbjct 10258928 AAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGA 10258869 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 10258868 ATTCCTTCCTTATCCTG 10258852 >seq51 Length=58617616 Score = 93.3 bits (102), Expect = 6e-14 Identities = 217/311 (70%), Gaps = 31/311 (10%) Strand=Plus/Minus Query 112497 ATATAATATATTTTAAATCGAATACTTTAAATGATATTTTATATA-AATTATGTTCTGAA 112555 |||||||||||| || || ||| | || | ||||| |||||| |||||| | || Sbjct 7062224 ATATAATATATTATATATATAATTATATATAATATATTATATATATAATTATAT--ATAA 7062167 Query 112556 GATATTATAATTCCCGATGATAGtt-atataaata-attta-aattata-atgatatgtt 112611 |||||||||| || ||| || |||||| || || || ||||||| || |||| | Sbjct 7062166 TATATTATAATATATAATTATATTTAATATAATTATATATATAATTATATATAATATAAT 7062107 Query 112612 tatatctgaaataatgggatttaataaaattatgagacaatttatagaattatttaaaag 112671 ||||| | ||||| || ||||| |||||| | |||||||| || ||| Sbjct 7062106 TATAT---ATATAATTATATATAATATAATTATATTATAATTTATAATATAATT------ 7062056 Query 112672 aaatattt-attatataagaaagaa-tatattattatttgttattataaattttatttta 112729 |||||| ||||||||| | | || |||| ||||| || ||||||| || | ||| || Sbjct 7062055 --ATATTTAATTATATAATATATAATTATA-TATTAATT-ATATTATATATATAATTATA 7062000 Query 112730 t----ctatattaattgtttatgtgggtattgtata-tattaaaaagtatgaaaatttat 112784 | ||||||| | |||| | |||| |||| ||| | |||||| | ||| ||| Sbjct 7061999 TAATAATATATTATATAATTATAT---TATTATATATTATCTATAAGTAT-ATAATATAT 7061944 Query 112785 atttatataat 112795 | |||||| || Sbjct 7061943 AATTATATTAT 7061933 Score = 93.3 bits (102), Expect = 6e-14 Identities = 147/207 (71%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| |||||||||| | || ||||||| || |||| || ||| ||| | ||| Sbjct 52451668 TTCCTTCTGGATGTTATGGA-GAGTAGCTCCAAGGTCTGGCTTGGCTGCAAAACACTTTG 52451726 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 ||||| | |||||||| | | || |||||||||||||||||||| || || || | | Sbjct 52451727 TTGATGTAGGAGCTGGTATCACAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTCT 52451786 Query 10549 TTAATCATTCTAATGAAGATTTTATAAT-AAATAGAGGAGATAGAATATCTCAATTAATA 10607 ||||| || || ||| | ||| | | ||| | ||| ||| |||| | || | || Sbjct 52451787 TTAATTTTTGCAAAGAAAAGTTTGAAGTCAAAAAAAGGTGATCGAATTGCACAGCTCATT 52451846 Query 10608 TGTGAAAAAATTTTAT-ATCCTAAAAT 10633 |||||| ||||| | |||| |||| Sbjct 52451847 TGTGAACGGATTTTTTAATCCAGAAAT 52451873 >seq18 Length=181538259 Score = 89.7 bits (98), Expect = 8e-13 Identities = 218/316 (69%), Gaps = 22/316 (7%) Strand=Plus/Minus Query 112497 ATATAATATATTTTAAATCGAATACTTTAAATGATATTTTATATAAATTATGTTCTGAAG 112556 ||||||||||| ||| || |||| | || || |||| ||||||| ||||| | | | Sbjct 132176067 ATATAATATATATTATATATAATA-TATATATTATATATTATATATATTATATATTATAT 132176009 Query 112557 ATATTATA-ATTCCCGATGATAGttatataaataattta-aattataatgatatgttt-- 112612 ||| |||| | | || ||| || ||| |||||||| | || ||| |||| ||| Sbjct 132176008 ATAATATATAATATATATTATATATA-ATATATAATTTATATTTTTAAATATATATTTTA 132175950 Query 112613 -atatctgaaata-atgggatttaataaaattatgagacaatttata-gaat---tattt 112666 |||| | |||| || || || | || ||| | | ||| |||| ||| ||||| Sbjct 132175949 AATATGTTTAATATATATTATATATTTTAAATAT-ATATAATATATATTAATATATATTT 132175891 Query 112667 aaaaga---aatatttattatataagaaagaatatattattatttgttattataaatttt 112723 ||| | ||||| |||||| ||| | | |||||| ||||| |||| |||||| | Sbjct 132175890 TAAATATATAATATATATTATTTAATATATAATATA----TATTTATTATATTAAATTAT 132175835 Query 112724 attttatctatattaattgtttatgtgggtattgtatatattaaaaagtatgaaaattta 112783 ||| || |||||||||| | | | |||| ||||||||| | ||| ||| || Sbjct 132175834 ATTAAATATATATTAATTATATTAATATATATTTAATATATTAATATATAT-TTAATATA 132175776 Query 112784 tatttatata-atttT 112798 |||| ||||| ||||| Sbjct 132175775 TATTAATATATATTTT 132175760 >seq21 Length=159345973 Score = 86.0 bits (94), Expect = 9e-12 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTA-GATTCTTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||| | | |||| || || || || || || Sbjct 157192592 CCACCACGAAGTCTCAACACAAGATGAAGAGTAAGCTCCTTTTGA-ATGTTGTAGTCAGA 157192534 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || | | | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 157192533 CAG--TACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 157192476 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 157192475 AATTCCTTCCTTATCCTG 157192458 >seq44 Length=90338345 Score = 84.2 bits (92), Expect = 3e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 146059 AAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTC 146117 |||||| || || | ||| | |||||| || ||| || ||||| || || || | ||| | Sbjct 61055696 AAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGACAAAGTAC 61055754 Query 146118 TGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTT 146177 | ||| || | || || |||||||| |||| ||| |||||||| ||||||||||||| Sbjct 61055755 GTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTT 61055814 Query 146178 CTTTA 146182 | ||| Sbjct 61055815 CCTTA 61055819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743521028021760