Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq64 248 8e-61 seq22 111 1e-19 seq11 98.7 9e-16 seq1 93.3 4e-14 >seq64 Length=156040895 Score = 248 bits (274), Expect = 8e-61 Identities = 527/781 (67%), Gaps = 18/781 (2%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| || ||| || || | ||| ||| |||||| | |||||| ||| ||| Sbjct 44309313 TTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCCATCC 44309372 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | ||||| || | |||||| | |||||||| || || |||| | ||||||||| | Sbjct 44309373 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44309427 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATA 16064 || |||| ||||| || | | | | | || | |||| ||||| || | Sbjct 44309428 CCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44309487 Query 16065 ATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 16124 ||| || |||||||| || || || || ||||||| | || ||||| || || | | Sbjct 44309488 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 44309547 Query 16125 TAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATAT 16184 | ||||| | || || || | || | || |||||| | ||| || | || ||||| | Sbjct 44309548 TCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTT 44309607 Query 16185 CTCTTACTACACTATTTAACGGAGGGTTT----AATAAGTGTTTAAACATTATACAAGCA 16240 |||| ||| || | | || ||||| | | |||||| ||||| | |||||| Sbjct 44309608 CTCTCACTTT-CTCCT---CCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCA 44309663 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 |||||||| || || || || || || || || | || || ||||| || || || ||| Sbjct 44309664 AAATCACAGTGTAAACCCTCTTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGC 44309723 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 || |||||||||| || | ||| ||||| | ||||| |||||||||||||| || ||| Sbjct 44309724 ATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCT 44309783 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttctatcc 16418 || ||||| ||||| || || | || ||||| || || || ||| | | | |||| Sbjct 44309784 TCTACTGCAGCAAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCC--CCAATCC 44309841 Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478 | ||||||| ||| || | || ||||| ||| | || || ||||| || | Sbjct 44309842 AGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT-TCAATGGCATTGAAGA 44309900 Query 16479 AATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538 | | | |||||||| |||| || ||||| || || || | |||||||||||| | Sbjct 44309901 GAAATTCCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAG 44309960 Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598 |||| || || ||||| || || || || ||||| || || | ||||| | || || | Sbjct 44309961 AATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAA 44310020 Query 16599 CTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAA 16658 || | ||| | || | || ||||| || | ||| ||||| || |||||||| | Sbjct 44310021 CTATTTGGCTAAATCGCTCCACCAAATTTTCATTTATTATGCCATCACTTGCTGCAAAGA 44310080 Query 16659 A 16659 | Sbjct 44310081 A 44310081 Score = 116 bits (128), Expect = 3e-21 Identities = 303/458 (66%), Gaps = 7/458 (2%) Strand=Plus/Minus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 |||||||| | ||| || || || || || || || || | || || |||||||| || Sbjct 144309692 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144309633 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||| |||||| |||| || | ||| ||||| ||||| |||||||||||||| Sbjct 144309632 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 144309573 Query 16355 ATACCTTCAACTGCGGCAAA---TGCAACCAA-TCGCTCACCGTACGTTCTAtttttact 16410 | | ||| || |||||| |||| ||| || || || | || | ||| | Sbjct 144309572 GTGCTTTCCACCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTTGTT 144309513 Query 16411 ttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGC 16470 | ||||| ||||| ||| || | || |||||| ||| | || || || Sbjct 144309512 CCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACAG-GCATCGTTTCAATGGC 144309454 Query 16471 ATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATA 16530 | | || | | | | |||||||| ||||| ||||| || || || || | | ||| Sbjct 144309453 ACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAATAT--GTGTCAATAAGGAGATTATT 144309396 Query 16531 CATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGA 16590 ||||| ||||| || || || || || || || || ||||| ||||| | ||| | Sbjct 144309395 TATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGT 144309336 Query 16591 TATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGC 16650 || || ||||| ||| ||| | |||||||| | | ||| ||||| | || Sbjct 144309335 AATCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGC 144309276 Query 16651 TGCAAAAAACGCAAGTATGTGTTTAATAAAAttttttt 16688 |||||| || || || || || ||||||| | ||| Sbjct 144309275 TGCAAAGAAAGCCAGAATATGGGATATAAAATATCTTT 144309238 >seq22 Length=145138636 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || || |||||| | | | || |||||||| | Sbjct 102208132 TTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCTGCCATAACTGCAAAAC 102208191 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || |||||||||||||||||||||||||| ||||| |||| Sbjct 102208192 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTT 102208251 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||||||||||| || Sbjct 102208252 CCATAAAATCAAAAGGATTTTCTG 102208275 >seq11 Length=242193529 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||| ||||||||||| || Sbjct 10127219 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10127160 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| ||||| |||||||| || ||||| ||||| ||||| || Sbjct 10127159 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 10127100 Query 16379 ACCAATCGCTCACC 16392 || | || ||||| Sbjct 10127099 ACAACACGTTCACC 10127086 >seq1 Length=248956422 Score = 93.3 bits (102), Expect = 4e-14 Identities = 216/321 (67%), Gaps = 10/321 (3%) Strand=Plus/Plus Query 16347 AAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT--CTAtt 16404 ||||||| ||| |||| ||||| ||||| || || | | ||||| || || || || Sbjct 161378705 AAAAGAAGATATCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCTCTT 161378764 Query 16405 tttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTC 16464 | | | | || || | ||||||||||| || | | ||||| |||| || Sbjct 161378765 TGTCCC--CAATACAACTCAAGGCCCAATTTGCCTTCT---TGACACAAGG--TGTT-TC 161378816 Query 16465 TATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAA 16524 || | || || | | | | |||||||| |||| || ||||| || || || | Sbjct 161378817 AATGGTGTTGAAGAGAAATTCCCTTTCTTTGGCATCTTTTATGTAAGTGTCAATAAGGAG 161378876 Query 16525 ACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGC 16584 |||||||||||| ||||| | || ||||| || || || || |||| || || | || Sbjct 161378877 ACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGC 161378936 Query 16585 TTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATC 16644 ||| | || || ||||| | ||| | || | |||||||| || ||||| ||||| Sbjct 161378937 TTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATC 161378996 Query 16645 GCTAGCTGCAAAAAACGCAAG 16665 || |||||||| || || || Sbjct 161378997 ACTTGCTGCAAAGAAAGCCAG 161379017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462508658350800