Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq42 1577 0.0 seq23 132 3e-26 >seq42 Length=101991189 Score = 1577 bits (1748), Expect = 0.0 Identities = 1370/1696 (81%), Gaps = 51/1696 (3%) Strand=Plus/Plus Query 107098 GCTGGTTTGCAGCATCAGGTTACAGATGTCCATCCACAA-----------GGGTCTT--A 107144 ||| ||||| || |||| |||||||| |||||| |||| ||| ||| | Sbjct 59617997 GCTAGTTTGTAGGGTCAGATTACAGATCTCCATCAACAAACCAGATGTAAGGGGCTTCTA 59618056 Query 107145 GGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCACTCTGG 107204 |||||| ||| ||| ||||| |||||| | |||| || | | ||| |||||| | ||| Sbjct 59618057 GGCAGGTCTTTACTAAGGATTTTTGTCCAGGTAAGAAATATTT-TTTGCCATCAGTTTGG 59618115 Query 107205 AGTTGAACTTGATGTT-CTGG-----ATTAGTTTGTAATTAAAGGCATTTTGTTCTGTCC 107258 | |||||||||||||| |||| ||| |||||||| | |||||||||||||||||| Sbjct 59618116 AATTGAACTTGATGTTTCTGGGAATGATTGGTTTGTAACTGGAGGCATTTTGTTCTGTCC 59618175 Query 107259 AAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAACTCT-CCTGATCTCCCATCCCAT 107314 |||||| |||||||||||||| ||||||| | ||| |||| |||||||| | | Sbjct 59618176 AAGGATTGTGTCCTCCTCCACCTTCCCTGTGCTCGGTCTCCACCTG-TCTCCCATTCTGT 59618234 Query 107315 GAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTG 107374 || ||||| | ||||||| || || |||| | ||| | ||||||| |||||||| Sbjct 59618235 GACGATGGTTCAATGGAAGA-GA--CTCTGCCAGCTGCATTACTTGTGGGCTCTGGGCTG 59618291 Query 107375 CTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGA 107434 |||||||||||||||| ||| |||||| |||||| ||||||| || ||||| || Sbjct 59618292 CTATATGCTGCTGGCCACTGTGGCTCTGAAACTTTCTTTCAGGTTGAAGTGTGACTCTGA 59618351 Query 107435 TTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAA 107494 ||||| ||||||||||||||| | || || ||| |||||||| | || ||||| || Sbjct 59618352 CCACTTGGGTCTGGAGTCCAGGGAATCTCAAAGCCAGTACTGTAGGAATATCTTGTATAA 59618411 Query 107495 TAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCA 107554 | |||||| || ||||||||||| || ||||||||||| ||| |||| ||||||||||| Sbjct 59618412 TTTCCTGAAACTTCCAGCAAAGAGGTCTATCAACTGTTCAGGGGTCACCCGAGGGGACCA 59618471 Query 107555 GGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCT 107614 || |||||| | ||||| | || | |||||||| || ||||| ||||| |||| | Sbjct 59618472 AGAGGCAGTGCTTCAGGCTATTCTGAATAACCTGGAGGTCAAGAAGAAGCGAGAGCCTTT 59618531 Query 107615 CACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAA 107674 ||| | |||| | |||||| | | |||||||||||||||| ||||||||| ||||||| Sbjct 59618532 CACAGACACCCACTACCTCTCCCTCACCAGAGACTGTGAGCACTTCAAGGCTGAAAGGAA 59618591 Query 107675 GTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGT 107734 ||||||||||||||||||||| ||||||||| | || ||||| ||||| ||||| ||||| Sbjct 59618592 GTTCATACAGTTCCCACTGAGCAAAGAAGAGGTGGAGTTCCCTATTGCATACTCTATGGT 59618651 Query 107735 GGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAA 107794 | | |||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| Sbjct 59618652 GATTCATGAGAAGATTGAAAACTTTGAAAGGCTACTGCGAGCTGTGTATGCCCCTCAGAA 59618711 Query 107795 CATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGC 107854 ||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| || Sbjct 59618712 CATATACTGTGTCCATGTGGATGAGAAGTCCCCAGAAACTTTCAAAGAGGCGGTCAAAGC 59618771 Query 107855 CATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGC 107914 |||||||| |||||||| ||||||||||| ||||||||| |||| | |||||||||||| Sbjct 59618772 AATTATTTCTTGCTTCCCAAATGTCTTCATAGCCAGTAAGCTGGTTCGGGTGGTTTATGC 59618831 Query 107915 CTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGT 107974 |||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 59618832 CTCCTGGTCCAGGGTGCAAGCTGACCTCAACTGCATGGAAGACTTGCTCCAGAGCTCAGT 59618891 Query 107975 GCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGA 108034 ||| ||||| ||||| ||||||||||| ||||| ||||| || ||||||| |||||| || Sbjct 59618892 GCCGTGGAAATACTTCCTGAATACATGTGGGACGGACTTTCCTATAAAGAGCAATGCAGA 59618951 Query 108035 GATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTC 108094 |||||||| ||| |||||||||||||| || | ||| || |||||||| ||||||||| | Sbjct 59618952 GATGGTCCAGGCTCTCAAGATGTTGAATGGGAGGAATAGCATGGAGTCAGAGGTACCTCC 59619011 Query 108095 TGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAG---GTGACAGACACACTGTACCC 108151 | || |||| ||| ||||||||||| | || |||| |||| ||||||| | ||| Sbjct 59619012 TAAGCACAAAGAAACCCGCTGGAAATATCACTTTGAGGTAGTGAGAGACACATTACACCT 59619071 Query 108152 TACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTA 108211 |||| ||||| |||||| ||||||||| |||||||| | ||||| ||||||||||| || Sbjct 59619072 AACCAACAAGAAGAAGGATCCTCCCCCTTATAATTTAACTATGTTTACAGGGAATGCGTA 59619131 Query 108212 TTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACT 108271 ||||||| || |||| || ||||||||||| || | ||||||||||||||| ||| Sbjct 59619132 CATTGTGGCTTCCCGAGATTTCGTCCAACATGTTTTGAAGAACCCTAAATCCCAACAACT 59619191 Query 108272 GGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG 108331 | |||||||||| |||||||| |||||||| || |||||||||||||||||||||||||| Sbjct 59619192 GATTGAATGGGTAAAAGACACTTATAGCCCAGATGAACACCTCTGGGCCACCCTTCAGCG 59619251 Query 108332 TGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGAC 108391 ||| | ||||||||||||||||||||| | |||||||||||| |||||||||||||||| Sbjct 59619252 TGCACGGTGGATGCCTGGCTCTGTTCCCAACCACCCCAAGTACGACATCTCAGACATGAC 59619311 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451 | | || |||||||| |||||||||||| || |||||||| || | ||| || || Sbjct 59619312 TTCTATTGCCAGGCTGGTCAAGTGGCAGGGTCATGAGGGAGACATCGATAAGGGTGCTCC 59619371 Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 |||||| ||||||||||||||||| | | |||| |||||| |||| ||||| |||||| | Sbjct 59619372 TTATGCTCCCTGCTCTGGAATCCACCAGCGGGCTATCTGCGTTTATGGGGCTGGGGACTT 59619431 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGA 108571 | | ||||| || || ||||||||||| ||||| |||||||||||||| | ||| ||||| Sbjct 59619432 GAATTGGATGCTTCAAAACCATCACCTGTTGGCCAACAAGTTTGACCCAAAGGTAGATGA 59619491 Query 108572 TAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACT 108631 ||| | || |||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 59619492 TAATGCTCTTCAGTGCTTAGAAGAATACCTACGTTATAAGGCCATCTATGGGACTGAACT 59619551 Query 108632 TTGAGCTGCACTGT-------------------GGGCCAGGGACTGTGCCAACATGCCCA 108672 ||||| |||| | |||| || | ||| | ||||||| || Sbjct 59619552 TTGAGACACACTATGAGAGCGTTGCTACCTGTGGGGCAAGAGCATGTACAAACATGCTCA 59619611 Query 108673 GGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATGGCATCCCCCA 108732 | | | |||| || |||| ||||||| ||| |||||| || ||| | |||||||| | Sbjct 59619612 GAACTTGCTGGGACAGTGT-GGGTGGGAGACCAGGGCTTTGCAATTCGTGGCATCCTTTA 59619670 Query 108733 GGGTCAGAGGGCTGCT 108748 || | ||||||||||| Sbjct 59619671 GGATAAGAGGGCTGCT 59619686 >seq23 Length=138394717 Score = 132 bits (146), Expect = 3e-26 Identities = 572/896 (64%), Gaps = 49/896 (5%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| || || || || || || || || ||||| ||| | ||| Sbjct 76502718 CCCCTTAGTAAAGAAGAGGCGGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAG 76502777 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||||||| | ||| | ||| |||||||| | || || | Sbjct 76502778 ATTGAAATGCTTGACAGGCTGCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 76502837 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAA---AGAGGCGGTCAAGGCCATTATTTCC 107864 || ||||| || ||| ||| || | | || || || | || ||| |||| Sbjct 76502838 CATGTGGACACAAAATCC---GAGGATTCCTATTTAGCTGCAGTGATGGGCATCGCTTCC 76502894 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 || || |||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 76502895 TGTTTTAGTAATGTCTTTGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCGTGGAGC 76502954 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCA-GAGCTCAGTGCCA--TGG 107981 | || || |||||||| ||||| ||| | || ||| | | | ||||| | ||| Sbjct 76502955 CGGGTTCAGGCTGACCTCAACTGCATGAAGGAT---CTCTATGCAATGAGTGCAAACTGG 76503011 Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 |||||||| | ||| || || | || || ||||| || ||||| || || ||| Sbjct 76503012 AAGTACTTGATAAATCTTTGTGGTATGGATTTTCCCATTAAAACCAACCTAGAAATTGTC 76503071 Query 108042 CTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGG---TACCTTCTGAG 108098 | |||||| |||| | ||| | |||| |||| | ||| | || || | Sbjct 76503072 AGGAAGCTCAAGTTGTTAATGGGAGAAAACAACCTGGAAACGGAGAGGATGCCATCCCAT 76503131 Query 108099 TCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGT---------------GACAGACACA 108143 ||| || | | ||||| | || |||||||| |||| ||||| Sbjct 76503132 ---AAAGAAGAAAGGTGGAAGAAGCGGTATGAGGTCGTTAATGGAAAGCTGACAAACACA 76503188 Query 108144 CTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGG 108203 | || ||| ||| ||||| | || | ||| | || | || Sbjct 76503189 GGG------ACTGTCAAAATGCTT---CCTCCACTCGAAAC---ACCTCTCTTTTCTGGC 76503236 Query 108204 AATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCC 108263 | |||||| || |||| | | | | | ||| |||| || | || ||| | Sbjct 76503237 AGTGCCTACTTCGTGGTCAGTAGGGAGTATGTGGGGTATGTACTACAGAATGAAAAAATC 76503296 Query 108264 CAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACC 108323 |||| || | || |||| ||||||| || ||||| || || | |||||||||||| Sbjct 76503297 CAAAAGTTGATGGAGTGGGCACAAGACACATACAGCCCTGATGAGTATCTCTGGGCCACC 76503356 Query 108324 CTTCAGCGTGCTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCACCCC-AAGTATCACATCT 108381 | || | ||| || | | || ||||| | ||| |||| || |||||| | | | Sbjct 76503357 ATCCAAAGGATTCC-TGAAGTCCCGGGCTCACTCCCT-GCCAGCCATAAGTATGATCTGT 76503414 Query 108382 CAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCA 108441 | |||||| || | |||||| | ||||||||||||||| ||||| ||||| || Sbjct 76503415 CTGACATGCAAGCAGTTGCCAGGTTTGTCAAGTGGCAGTACTTTGAGGGTGATGTTTCCA 76503474 Query 108442 TGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGG 108501 ||| || || || | |||||| |||| ||||| | | | | ||||||| ||| | Sbjct 76503475 AGGGTGCTCCCTACCCGCCCTGCGATGGAGTCCATGTGCGCTCAGTGTGCATTTTCGGAG 76503534 Query 108502 CCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | || ||| || ||||||| || | || || ||| | || || || ||||||||| Sbjct 76503535 CTGGTGACTTGAACTGGATGCTGCGCAAACACCACTTGTTTGCCAATAAGTTTGAC 76503590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348266346663972