Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq46 95.1 9e-15 seq31 93.3 3e-14 >seq46 Length=83257441 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || ||||||||||| | | || | |||| Sbjct 16382119 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCT 16382060 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | |||||||||||| Sbjct 16382059 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCC 16382000 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | | | ||||||| |||||| |||| ||||||| | Sbjct 16381999 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 16381940 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||| | ||||| || || || |||||||| Sbjct 16381939 TTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTT 16381905 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || || || || ||||| || ||||||||||| | | | | |||| Sbjct 22204304 AGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGACTGCGGCCATCT 22204245 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||| || ||||| ||| |||| || || || || || ||| |||||| ||||| Sbjct 22204244 TCCCGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCACAGGGATTGCCTTCTTTATCT 22204185 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| | || ||||| | | | | |||| ||| |||||| ||||| ||||||| | Sbjct 22204184 TGGATTT-TGGCTTTGACATTTTCGATAGTGGCACTGGGCTCCACTTCAAGGGTGATGAT 22204126 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||| | ||||| || || || ||||||| Sbjct 22204125 CTTGCCGGTAAGGGTTTTCACGAAGATCCGCATTTT 22204090 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || ||||||||||| | | || | |||| Sbjct 22204759 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACCGCCATCT 22204700 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || |||| | ||| | |||||| ||||| Sbjct 22204699 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGAT-CGGGGGGATGCCTTCTTTATCT 22204641 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | | | ||||||| |||||| ||| | ||||||| | Sbjct 22204640 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTC 22204581 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||| || || || || || ||||| Sbjct 22204580 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 22204549 >seq31 Length=133275309 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 124912876 AGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 124912935 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| | || || || || || | ||||||||| || Sbjct 124912936 TCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 124912995 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | |||| ||||| | | | |||||||| ||||||| |||| ||||||| | Sbjct 124912996 TGGATCT-TTGCTTTGACGTTCTCGATAGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 124913054 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | ||| || || || |||||||| Sbjct 124913055 CTTGCCAGTGAGTGTCTTCACGAAGATTTGCAT 124913087 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 124911736 AGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 124911795 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| | || || ||||| || | |||||||||||| Sbjct 124911796 TCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGATCAGGAGGGATGCCTTCCTTATCT 124911855 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | | | ||||||| |||||| || | ||||||| | Sbjct 124911856 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTC 124911915 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || |||| || || || || |||||||| Sbjct 124911916 TTACCAGTCAGGGTCTTCACGAAGATTTGCAT 124911947 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||||| ||| | || || ||||| || ||||||||||| | || || || |||| Sbjct 124913104 AGTACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 124913163 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| | || || ||||| || | |||||||||||| Sbjct 124913164 TCCAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCCTTATCT 124913223 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | | | ||||||| |||||| || | ||||||| | Sbjct 124913224 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTC 124913283 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || |||| || || || || || ||||| Sbjct 124913284 TTACCAGTCAGGGTCTTCACGAAGATCTGCAT 124913315 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 124913332 AGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 124913391 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| | || || || || || | ||||||||| || Sbjct 124913392 TCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 124913451 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | |||| ||||| | | | ||||||| ||||||| |||| ||||||| | Sbjct 124913452 TGGATCT-TTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 124913510 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | ||| || || || |||||||| Sbjct 124913511 CTTGCCAGTGAGTGTCTTCACGAAGATTTGCAT 124913543 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 124913560 AGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 124913619 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| || || || || || || | |||||||||||| Sbjct 124913620 TCCAGCTGTTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCT 124913679 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | | | ||||||| |||||| || | ||||||| | Sbjct 124913680 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 124913739 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || |||| || || || || || |||||| Sbjct 124913740 TTACCAGTCAGAGTCTTCACGAAGATCTGCATT 124913772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379341327758610