Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq64 269 2e-67 seq11 116 3e-21 seq22 111 1e-19 seq1 96.9 3e-15 seq29 93.3 4e-14 >seq64 Length=156040895 Score = 269 bits (298), Expect = 2e-67 Identities = 537/786 (68%), Gaps = 21/786 (3%) Strand=Plus/Plus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAA 11367 |||||||| | | ||| | ||| |||||| | ||||| || | |||| | || || Sbjct 44309341 ATTCTCTTTTGGACTTGACACCACTCCCATCCTCTGATACTCGCCTACTCTCCTCTCAAA 44309400 Query 11368 AAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATT 11427 || |||||||| | ||||| |||| |||| ||||| ||| || | | ||| Sbjct 44309401 GAAGTTAGTCTTTC-----AGTGAAATATTCTCCGTAAAGTCAAATGGGCTCTCTACTCC 44309455 Query 11428 GAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTG 11487 ||| || || | |||| | || | | ||| ||||| || || || || || || Sbjct 44309456 GAAAACCTTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTG 44309515 Query 11488 AGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTC 11547 ||||| | |||||||| || || || | ||| || | || | || | || || Sbjct 44309516 CTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTC 44309575 Query 11548 CTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTT---CCTTAGATGGTGG 11604 | |||||| | ||| |||| || ||||| | | |||| ||| |||||| Sbjct 44309576 TTGTTCTATCTGAACAGCATTGATAATTATTTC---TCTCACTTTCTCCTCCGATGGTTT 44309632 Query 11605 ATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACT 11664 |||| | ||||| ||||| || || ||||||||||| |||||||| || ||||| || Sbjct 44309633 GTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATCACAGTGTAAACCCTCTTCTCTGCT 44309692 Query 11665 TATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT 11724 || |||||||| ||||| || | || |||||| ||||||||| || | ||| ||||| Sbjct 44309693 AATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATAT 44309752 Query 11725 AGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784 | ||||| |||||||||||||| || || || || || ||||| ||||| || | ||| Sbjct 44309753 CGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGGCTACAACACGTTC 44309812 Query 11785 TCCATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTAC 11841 ||||| || ||| ||| ||||| ||||||||| || ||||| || || Sbjct 44309813 ACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGAC 44309872 Query 11842 GCATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACA 11899 || ||| | ||| || || || | | |||| | ||||| | |||| | | Sbjct 44309873 ACAAGGCATCG-TTCAATGGCATTGAAGAGAAATTC--CCTTTCTTTGGGATCTTTGATG 44309929 Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || || || || | | |||||||||||| ||||| || |||||||| || ||||| || Sbjct 44309930 TAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAG 44309989 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTAC-ATCCACATAAAATCTTTCCGCTAAATT 12018 ||||||||||| || || |||| | ||| || || | ||||| ||| | ||||| Sbjct 44309990 CCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTTGGCT-AAATCGCTCCACCAAATT 44310048 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 ||||||| || |||||||| | |||||| || | || | ||| |||||| ||| | Sbjct 44310049 TTCATTTATTATGCCATCACTTGCTGCAAAGAAAACCAGAACATGGGATATAAAATATCT 44310108 Query 12079 TTCGTC 12084 || || Sbjct 44310109 CTCCTC 44310114 Score = 154 bits (170), Expect = 1e-32 Identities = 317/463 (68%), Gaps = 20/463 (4%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||| | ||| |||||||| || || || || || |||||||| |||||||| | Sbjct 144309692 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144309633 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || ||||||| |||| |||| || | ||| ||||| ||||| |||||||||||||| Sbjct 144309632 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 144309573 Query 11750 ATTCCCTCCACAGCTGCAAATGC----TACTACTCTTTCTCCAT--ATA----CCTTGTT 11799 | | ||||| ||||| || | | || | |||||||| || | ||||| Sbjct 144309572 GTGCTTTCCACCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTTGTT 144309513 Query 11800 GCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTAT 11859 | | ||||| | ||||| | || ||||| || || || ||| ||||| || Sbjct 144309512 CCCA---ATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAAT 144309457 Query 11860 AGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAA 11917 || | | | |||| | ||||| | |||||| ||| |||||| || || | | | Sbjct 144309456 GGCACTGAAGAGAAATTC--CCTTTCTTTGTTATCT-TTA-ATATGTGTCAATAAGGAGA 144309401 Query 11918 CTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCC 11977 ||| ||||| ||||| || ||||| ||||| ||||| || |||||||| || | Sbjct 144309400 TTATTTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTT 144309341 Query 11978 TCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCA 12037 |||| | ||| || || | |||| |||| | || || |||| || || |||||| Sbjct 144309340 TCTGTAATCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCA 144309281 Query 12038 CTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTT 12080 | | |||||| || || || ||||| |||||| ||| ||| Sbjct 144309280 CATGCTGCAAAGAAAGCCAGAATATGGGATATAAAATATCTTT 144309238 >seq11 Length=242193529 Score = 116 bits (128), Expect = 3e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || ||||||||||||||||| | || ||||||| ||||||||| || Sbjct 10127219 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10127160 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| ||||| |||||||| || || ||||| || ||||| ||| Sbjct 10127159 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 10127100 Query 11774 ACTACTCTTTCTCC 11787 || || | ||| || Sbjct 10127099 ACAACACGTTCACC 10127086 >seq22 Length=145138636 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 102218813 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 102218872 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| | ||| || ||||| ||||| | Sbjct 102218873 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 102218932 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 102218933 CCACCACTCTTTCCCC 102218948 >seq1 Length=248956422 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||| ||| || || || || | | |||||||||||| ||||| | |||||||| || Sbjct 161378850 ATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGC 161378909 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTC 12009 ||||| || |||||||||| || || |||| | ||| || || ||||| || Sbjct 161378910 AATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 161378969 Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAG 12057 | | || || |||||||| || |||||||| | |||||| || || || Sbjct 161378970 CACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAG 161379017 >seq29 Length=135086622 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| || || ||||||||| Sbjct 4132423 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 4132364 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || || |||||||| || || || || | Sbjct 4132363 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 4132304 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 4132303 CTGTTTCTTATACCAT 4132288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468521414908320