Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq50 143 2e-29 seq14 111 1e-19 seq544 89.7 4e-13 seq538 89.7 4e-13 seq511 89.7 4e-13 seq547 84.2 2e-11 seq20 84.2 2e-11 >seq50 Length=80373285 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| || |||| ||||| || |||||||||||||||||||| || | Sbjct 670865 TCAGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAG 670806 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || |||||||||||||| | || |||||||||||||||||||||||||| | Sbjct 670805 GCACACCGAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCA 670746 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||| || ||||| || | | || || ||||| || |||||| Sbjct 670745 CCACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATC 670702 >seq14 Length=198295559 Score = 111 bits (122), Expect = 1e-19 Identities = 193/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || | |||| || ||||| || ||||| || || ||||| | | Sbjct 94061216 TTTAAGGCATCATCCAAACTTCTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGT 94061275 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 |||||||| | || | ||||||||| | | | ||| || ||||| ||||| ||||| Sbjct 94061276 TCTCTGCTGAGAACTAAATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGAATGGAG 94061335 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | | |||||||| |||| ||||| || ||| | || || | || | Sbjct 94061336 AACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCCTCTACTGAAGAAGTTGTG 94061395 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTT 3202 |||||| |||| |||||| | | ||| || || || ||||| |||| ||||| Sbjct 94061396 GTCATTCTCTGGAAATACCTGAATTCATTCCTGAGCGGCGGCCTGGGCAGGTCCCCGTTC 94061455 Query 3203 TTACCAATTCCTAATTGTTCATCAACTGCAACGATGCAGTT 3243 || || || || | | || || || ||||||||||| Sbjct 94061456 TTGCCGATGCCCATGTTTTGGGACACAGCGACGATGCAGTT 94061496 >seq544 Length=4606388 Score = 89.7 bits (98), Expect = 4e-13 Identities = 180/264 (68%), Gaps = 5/264 (2%) Strand=Plus/Plus Query 2982 TTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTGCTCAAAATAATAT 3041 |||| || ||||| || |||| || || ||||| | ||||||||| | || | || Sbjct 2622312 TTCTGGCAAGAAAATGAGCTCGTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAAT 2622371 Query 3042 TAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCATGTTCTTTTCCCCA 3101 ||||||| | | ||| || ||||| |||| ||||| ||||| || | | | || Sbjct 2622372 TAATTCTATCCTTTGAAGGTCGATTCTTCCCAGGAATGGAGAACCAGGTCTTCCTACACA 2622431 Query 3102 TAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATTTTCTGAAAATACA 3161 ||| |||| ||||| || |||| | || || | | | |||||| |||| |||||| Sbjct 2622432 AAATCACCAGATTCTGTTTACCTTCTACTGAAGAGATTGT-GTCATTCTCTGGAAATACC 2622490 Query 3162 TCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTTTTACCAATTCCTAATTGTT 3221 | | ||| || || || |||||| |||| ||||| || || || || | |||| Sbjct 2622491 TAAATTCATTCCTGAGCGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCA--TGTT 2622548 Query 3222 C--ATCAACTGCAACGATGCAGTT 3243 | | || || ||||||||||| Sbjct 2622549 CTGAGACACAGCGACGATGCAGTT 2622572 >seq538 Length=4677643 Score = 89.7 bits (98), Expect = 4e-13 Identities = 180/264 (68%), Gaps = 5/264 (2%) Strand=Plus/Plus Query 2982 TTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTGCTCAAAATAATAT 3041 |||| || ||||| || |||| || || ||||| | ||||||||| | || | || Sbjct 2675231 TTCTGGCAAGAAAATGAGCTCGTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAAT 2675290 Query 3042 TAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCATGTTCTTTTCCCCA 3101 ||||||| | | ||| || ||||| |||| ||||| ||||| || | | | || Sbjct 2675291 TAATTCTATCCTTTGAAGGTCGATTCTTCCCAGGAATGGAGAACCAGGTCTTCCTACACA 2675350 Query 3102 TAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATTTTCTGAAAATACA 3161 ||| |||| ||||| || |||| | || || | | | |||||| |||| |||||| Sbjct 2675351 AAATCACCAGATTCTGTTTACCTTCTACTGAAGAGATTGT-GTCATTCTCTGGAAATACC 2675409 Query 3162 TCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTTTTACCAATTCCTAATTGTT 3221 | | ||| || || || |||||| |||| ||||| || || || || | |||| Sbjct 2675410 TAAATTCATTCCTGAGCGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCA--TGTT 2675467 Query 3222 C--ATCAACTGCAACGATGCAGTT 3243 | | || || ||||||||||| Sbjct 2675468 CTGAGACACAGCGACGATGCAGTT 2675491 >seq511 Length=4795265 Score = 89.7 bits (98), Expect = 4e-13 Identities = 180/264 (68%), Gaps = 5/264 (2%) Strand=Plus/Plus Query 2982 TTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTGCTCAAAATAATAT 3041 |||| || ||||| || |||| || || ||||| | ||||||||| | || | || Sbjct 2846977 TTCTGGCAAGAAAATGAGCTCGCTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAAT 2847036 Query 3042 TAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCATGTTCTTTTCCCCA 3101 ||||||| | | ||| || ||||| |||| ||||| ||||| || | | | || Sbjct 2847037 TAATTCTATCCTTTGAAGGTCGATTCTTCCCAGGAATGGAGAACCAGGTCTTCCTACACA 2847096 Query 3102 TAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATTTTCTGAAAATACA 3161 ||| |||| ||||| || |||| | || || | | | |||||| |||| |||||| Sbjct 2847097 AAATCACCAGATTCTGTTTACCTTCTACTGAAGAGATTGT-GTCATTCTCTGGAAATACC 2847155 Query 3162 TCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTTTTACCAATTCCTAATTGTT 3221 | | ||| || || || |||||| |||| ||||| || || || || | |||| Sbjct 2847156 TAAATTCATTCCTGAGCGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCA--TGTT 2847213 Query 3222 C--ATCAACTGCAACGATGCAGTT 3243 | | || || ||||||||||| Sbjct 2847214 CTGAGACACAGCGACGATGCAGTT 2847237 >seq547 Length=4929269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 179/264 (68%), Gaps = 5/264 (2%) Strand=Plus/Plus Query 2982 TTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTGCTCAAAATAATAT 3041 |||| || ||||| || |||| || || ||||| | ||||||||| | || | || Sbjct 2668858 TTCTGGCAAGAAAATGAGCTCGTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAAT 2668917 Query 3042 TAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCATGTTCTTTTCCCCA 3101 ||||||| | | | | || ||||| |||| ||||| ||||| || | | | || Sbjct 2668918 TAATTCTATCCTTTGAAAGTCGATTCTTCCCAGGAATGGAGAACCAGGTCTTCCTACACA 2668977 Query 3102 TAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATTTTCTGAAAATACA 3161 ||| |||| ||||| || |||| | || || | | | |||||| |||| |||||| Sbjct 2668978 AAATCACCAGATTCTGTTTACCTTCTACTGAAGAGATTGT-GTCATTCTCTGGAAATACC 2669036 Query 3162 TCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTTTTACCAATTCCTAATTGTT 3221 | | ||| || || || |||||| |||| ||||| || || || || | |||| Sbjct 2669037 TAAATTCATTCCTGAGCGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCA--TGTT 2669094 Query 3222 C--ATCAACTGCAACGATGCAGTT 3243 | | || || ||||||||||| Sbjct 2669095 CTGAGACACAGCGACGATGCAGTT 2669118 >seq20 Length=170805979 Score = 84.2 bits (92), Expect = 2e-11 Identities = 179/264 (68%), Gaps = 5/264 (2%) Strand=Plus/Plus Query 2982 TTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTGCTCAAAATAATAT 3041 |||| || ||||| || |||| || || ||||| | ||||||||| | || | || Sbjct 31366623 TTCTGGCAAGAAAATGAGCTCGTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAAT 31366682 Query 3042 TAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCATGTTCTTTTCCCCA 3101 ||||||| | | ||| || ||||| |||| ||||| ||||| || | | | || Sbjct 31366683 TAATTCTATCCTTTGAAGGTCGATTCTTCCCAGGAATGGAGAACCAGGTCTTCCTACACA 31366742 Query 3102 TAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATTTTCTGAAAATACA 3161 ||| |||| ||||| || |||| | || || | | | |||||| |||| |||||| Sbjct 31366743 AAATCACCAGATTCTGTTTACCTTCTACTGAAGAGATTGT-GTCATTCTCTGGAAATACC 31366801 Query 3162 TCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTTTTACCAATTCCTAATTGTT 3221 | | ||| || || || ||| || |||| ||||| || || || || | |||| Sbjct 31366802 TAAATTCATTCCTGAGCGGCGGTCAGGGCAGGTCCCCGTTCTTGCCGATGCCCA--TGTT 31366859 Query 3222 C--ATCAACTGCAACGATGCAGTT 3243 | | || || ||||||||||| Sbjct 31366860 CTGAGACACAGCGACGATGCAGTT 31366883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427772986585440