Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq64 129 4e-25 >seq64 Length=156040895 Score = 129 bits (142), Expect = 4e-25 Identities = 274/399 (69%), Gaps = 24/399 (6%) Strand=Plus/Minus Query 22537 ATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAATGGAAAATATACATGCTGAA 22596 ||| |||||||| | ||||||||| || || | || |||||||| |||||| ||||| Sbjct 44310015 ATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAA 44309956 Query 22597 ATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAG----AATCAAGCCGCATTGTT 22652 ||||||| || || ||| ||| ||| | | ||||| || ||| || | Sbjct 44309955 ATGTATAGTCTCCTTATTGACAC-TTAC-ATC-AAAGATCCCAAAGAAAGGGAATTTCTC 44309899 Query 22653 TTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGCACAGTGGGC--TGCACAAT 22708 |||| || |||| ||||| ||||| || |||||| | ||||| ||| Sbjct 44309898 TTCAATGCCATTGAACG-ATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGC----- 44309845 Query 22709 GGCTGAAT--GCCACACATAAGT---CTATCGCAACACGTCTCTTGGCCTTTGCGGCTGT 22763 |||| || | ||| | | | |||| | | |||| | | |||||||| || || Sbjct 44309844 -GCTGGATTGGGGACAAAGAGGCTACCTATGGTGA-ACGTGTTGTAGCCTTTGCTGCAGT 44309787 Query 22764 TGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAGAAACGTTCGCT 22823 |||||| || | |||||||| || ||||| | ||||||||||| |||||||| | Sbjct 44309786 AGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAGAAACGAGGACC 44309727 Query 22824 CATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGTCTACACTGTGA 22883 ||||| || | |||||||||| || | |||||| | || || ||| |||||||||| Sbjct 44309726 GATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGAAGAGGGTTTACACTGTGA 44309667 Query 22884 CTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 |||||||| || |||| | || ||| | ||||||| Sbjct 44309666 TTTTGCTTGCTTGATGTTCAAACACCTGGTACACAAACC 44309628 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| || ||| || | | |||||||| || ||||| ||||||||||| Sbjct 144309550 GCCTTTGCCCTGGTGGAAAGCACCTTCTTTTCTGGTTCTTTTGCATTGATATTCTGGCTC 144309609 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 ||||||| || ||||| || | | |||||||| || | |||||| |||| || Sbjct 144309610 AAGAAACAAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGTGATGAG 144309669 Query 22870 GGTCTACACTGTGACTTTGCTTG 22892 ||| |||||||| |||||||||| Sbjct 144309670 GGTTTACACTGTTACTTTGCTTG 144309692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356231090556934