Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq64 396 4e-105 seq1 163 4e-35 seq29 114 2e-20 seq11 100 4e-16 seq51 86.0 9e-12 >seq64 Length=156040895 Score = 396 bits (438), Expect = 4e-105 Identities = 657/941 (70%), Gaps = 26/941 (3%) Strand=Plus/Plus Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 49669 |||| |||||| ||| || | |||| ||| |||| | || |||| |||||||| Sbjct 44309313 TTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCCATCC 44309372 Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 | || || || || || | | || || || ||||| |||| | ||| ||||| | Sbjct 44309373 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44309427 Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 49789 || | || ||||| || | || ||| || |||| |||| ||| || | Sbjct 44309428 CCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44309487 Query 49790 ATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 49849 ||| || || ||||| || || ||| ||||| | |||||||| || || || | Sbjct 44309488 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 44309547 Query 49850 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 49909 | || || | ||| | || || ||||||||||| || || |||| | || || Sbjct 44309548 TCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTT 44309607 Query 49910 ATCTAACGGTTTCTTCACTCGGTGGAT---GCAATAAATGTTTAAACATCAAACATGCGA 49966 ||| || ||||| | | || ||| | | | | ||||| |||||||| || || | Sbjct 44309608 CTCTCAC--TTTCTCCTC-CGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAA 44309664 Query 49967 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 50026 |||| ||||| | |||||| ||||| ||||| ||||| |||||||||||||| || |||| Sbjct 44309665 AATCACAGTGTAAACCCTCTTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCA 44309724 Query 50027 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTT 50086 | | || || || || ||||| ||||| || ||||| || |||||||||||||| |||| Sbjct 44309725 TCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTT 44309784 Query 50087 CTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCACT 50143 ||||||| |||||||| |||| | || ||||| | | | |||| ||||| Sbjct 44309785 CTACTGCAGCAAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGC 44309844 Query 50144 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 50203 |||||||| |||||||| || ||||||||||||| ||| |||||||| |||||| Sbjct 44309845 GCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCG-TTCAATGGCATTGAAGAGAA 44309903 Query 50204 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 50263 | | |||| || |||||| | ||||| || || | |||||||||||||| |||| Sbjct 44309904 ATTCCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAAT 44309963 Query 50264 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 50323 | |||||||| ||||| || || || || |||||||| | || || |||||||| ||| Sbjct 44309964 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTA 44310023 Query 50324 CTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 50383 | | |||||| || | ||||||||||| | ||| || ||||| |||||||| || Sbjct 44310024 TTTGGCTAAATCGCTCCACCAAATTTTCATTTATTATGCCATCACTTGCTGCAAAGAAAA 44310083 Query 50384 CCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTG---- 50439 ||| ||||| |||||||| | | || | ||| | || ||||| || || Sbjct 44310084 CCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAG-GGATTCC---CAGTGCCGA 44310139 Query 50440 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 50499 || || || || | || || || || ||||| || || ||||| ||||| | |||| Sbjct 44310140 ATGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTCATAC 44310199 Query 50500 ATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 || | |||||| ||||| || | ||| ||||| || ||||| Sbjct 44310200 ATCTGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 44310240 Score = 205 bits (226), Expect = 1e-47 Identities = 320/451 (71%), Gaps = 20/451 (4%) Strand=Plus/Minus Query 49972 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 50031 ||||| | |||||| || || ||||| ||||| |||||||| ||||| || ||||| || Sbjct 144309680 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 144309621 Query 50032 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACT 50091 || | || || ||||| ||||| | ||||| || |||||||||||| | | ||| || Sbjct 144309620 CCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAGGTGCTTTCCACC 144309561 Query 50092 GCGGCAAAGGC-------AACAAGTCTCTCTCCAT----AACTGGCGCTGTCATGTATCC 50140 ||||||||| |||| || ||||||| ||| | | ||| |||| Sbjct 144309560 AGGGCAAAGGCTGCATGCAACACGT---TCTCCATGGGTAAC-GTCTTTGTTCCCAATCC 144309505 Query 50141 A-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 50199 | | || ||||| | |||||||| || ||||| ||||||||||| |||||| | ||| Sbjct 144309504 AACACAAGA-CCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAATGGCACTGAAG 144309447 Query 50200 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 50259 ||| | | |||| || |||||||| ||| || || || | ||| ||| ||||| Sbjct 144309446 AGAAATTCCCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTATTTATTTCA 144309389 Query 50260 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 50319 ||||| |||||||| || || || || || || ||||| || | || |||||||| Sbjct 144309388 GAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATCTGA 144309329 Query 50320 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 50379 |||||| | |||| |||| | || ||||||| | ||| || |||| |||||||| Sbjct 144309328 ACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGCTGCAAAG 144309269 Query 50380 AACGCCAATACATGTTTTATAAAATGTTTTT 50410 || |||| | ||| |||||||| | ||| Sbjct 144309268 AAAGCCAGAATATGGGATATAAAATATCTTT 144309238 >seq1 Length=248956422 Score = 163 bits (180), Expect = 4e-35 Identities = 239/336 (71%), Gaps = 9/336 (3%) Strand=Plus/Plus Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC--- 50128 |||||||||| |||| ||||| |||||||| |||| | || ||||| | || Sbjct 161378705 AAAAGAAGATATCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCTCTT 161378764 Query 50129 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188 |||| || || | ||||||| |||||||| |||||||| ||||| | Sbjct 161378765 TGTCCCCAATACAACTCAAGGCCCAATTTGCCTTCTTG---ACACAAGGT---GTTTCAA 161378818 Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248 ||| || |||||| | | |||| || |||||| | ||||| || || | |||| Sbjct 161378819 TGGTGTTGAAGAGAAATTCCCTTTCTTTGGCATCTTTTATGTAAGTGTCAATAAGGAGAC 161378878 Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308 |||||||||| ||||| ||||||| ||||| || || || | |||||||| | || | Sbjct 161378879 TATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTT 161378938 Query 50309 CGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCAC 50368 | |||||||| |||||| | |||||| || | || |||||||| ||||| || |||| Sbjct 161378939 CTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCAC 161378998 Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 50404 | |||||||| || |||| ||| | |||||||| Sbjct 161378999 TTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 161379034 >seq29 Length=135086622 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| |||||||| || |||||| ||| | || || || || ||||| | Sbjct 4135265 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 4135206 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 4135205 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 4135146 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 4135145 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 4135095 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| |||||||||||||| | || |||||||||| | ||| Sbjct 4121752 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 4121693 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| ||||| | | || || ||||||| || Sbjct 4121692 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 4121633 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 4121632 TCCAGGTAAATAGC 4121619 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 4132423 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 4132364 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 4132363 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 4132304 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 4132303 CTGTTTCTTATACCATA 4132287 >seq11 Length=242193529 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||| | ||||| || || | ||||||||||||||| ||||| |||||||| ||||| Sbjct 10124839 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 10124780 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || || || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 10124779 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 10124720 >seq51 Length=58617616 Score = 86.0 bits (94), Expect = 9e-12 Identities = 176/257 (68%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762 ||| || || ||||| ||| | ||| || | || ||| | || ||| ||||| || Sbjct 52451934 TCCGGTAGAGCCAAAACCTCCTGATCCCCTTTTGGTGTCATCCAAAGCTTGAACTTCTTC 52451875 Query 47763 CAGTTCTGGAT-AATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTT- 47820 | |||||||| || | || |||| | | || ||||| || |||| ||| || | ||| Sbjct 52451874 TATTTCTGGATTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCTTTTTTTG 52451815 Query 47821 ACATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 47880 || | ||| | ||| | | ||||| || | || || | ||||| ||||||||| Sbjct 52451814 ACTTCAAACTTTTCTTTGCAAAAATTAAAGAGTACAACACCAACATTTCCTCTATAATCT 52451755 Query 47881 TCGTCTATTACACCACCTCCTATAT---CAATGCCTTTTAGTGACAGTCCAGACCTAGGA 47937 || ||| | | |||| |||||| || ||| | |||| | || |||||||| ||| Sbjct 52451754 TCATCTGTGATACCAGCTCCTACATCAACAAAGTGTTTTGCAGCCAAGCCAGACCTTGGA 52451695 Query 47938 GCTATTCTACCATAGCA 47954 |||| ||| ||||| || Sbjct 52451694 GCTACTCT-CCATAACA 52451679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718263610507920