Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq64 288 1e-72 seq11 123 2e-23 seq1 120 3e-22 >seq64 Length=156040895 Score = 288 bits (318), Expect = 1e-72 Identities = 533/777 (69%), Gaps = 14/777 (2%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 || || ||| ||| ||| | |||| ||| || | | | || | || ||||| | Sbjct 44309315 TAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCCATCCTC 44309374 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| || | ||||| | |||||||||||||| ||| |||||| ||||| ||| Sbjct 44309375 TGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAATATTCTCC 44309429 Query 13644 ATAAAATCAAATGGATT-TATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 |||| |||||||| | | | | ||| ||| | | |||| ||||| | | | Sbjct 44309430 GTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAA-AACCCAGTTCCAGCATAAG 44309488 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 ||| || || | ||||||||| ||||| ||||| | |||||||| || || || || Sbjct 44309489 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 44309548 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 ||||| | | ||| | ||||||| |||||| ||||| | | ||||| || Sbjct 44309549 CACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCAT---TGATAATTAT 44309605 Query 13823 TGTAATAA---TCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13879 | | | |||| | || || | | || ||||| || || || || ||||| Sbjct 44309606 TTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAA 44309665 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 |||||| || | ||||| ||||| ||||||||||| || ||||| || | || ||||| Sbjct 44309666 ATCACAGTGTAAACCCTCTTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCAT 44309725 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 | ||||||||| || | ||| ||||| | ||||| || || |||||||| || || || Sbjct 44309726 CGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTC 44309785 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059 ||||||||||| |||| | ||||| ||| | | || | ||||| | ||||| Sbjct 44309786 TACTGCAGCAAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCG 44309845 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119 ||||| || | || || || | | || ||| | |||||| ||||| || | | | Sbjct 44309846 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCG-TTCAATGGCATTGAAGAGAAA 44309904 Query 14120 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14179 |||| | ||||| | | | ||||| || |||||||| | |||||||||||||| || Sbjct 44309905 TTCCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATG 44309964 Query 14180 TATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 |||||||||||| || || || || ||||| || || | ||||| | || ||| Sbjct 44309965 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTAT 44310024 Query 14240 CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296 | ||||| || ||||||||||||| | ||| |||||||| |||||||| || Sbjct 44310025 TTGGCTAAATCGCTCCACCAAATTTTCATTTATTATGCCATCACTTGCTGCAAAGAA 44310081 Score = 149 bits (164), Expect = 6e-31 Identities = 304/443 (69%), Gaps = 13/443 (3%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| | ||| || | |||||||| || ||||||||||| || |||||||| | Sbjct 144309692 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144309633 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||||| |||| |||| || | ||| ||||| ||||| || || |||||||| Sbjct 144309632 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 144309573 Query 13992 ATTCCCTCAACTGCAGCAAACGCT--ATTAATC--GTTCTCCAAACGATGCTTTTTTGTT 14047 | | || || ||||| ||| || | | |||||||| | | | |||||| Sbjct 144309572 GTGCTTTCCACCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTTGTT 144309513 Query 14048 CGATATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14106 | ||||| | || |||| | | || || || | | | | || |||||||| | Sbjct 144309512 CCCAATCCAACA-CAAGACCCAACCTGCCTTCTTCTTGACACAGGC-ATCGTTTCAATGG 144309455 Query 14107 CATTAAATAAATATTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTA 14165 || | || | | ||||| | ||||| || ||| || ||||| |||||||| | || Sbjct 144309454 CACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAA---TATGTGTCAATAAGGAGATTA 144309398 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC 14225 | |||||||| ||||||||||| ||||| || || || ||||| ||||| | ||| Sbjct 144309397 TTTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCT 144309338 Query 14226 GACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 | || ||||| |||| ||| |||| ||||||| | ||| ||||||| Sbjct 144309337 GTAATCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACAT 144309278 Query 14286 GCTGCAAAAAATGCC--AATATG 14306 |||||||| || ||| |||||| Sbjct 144309277 GCTGCAAAGAAAGCCAGAATATG 144309255 >seq11 Length=242193529 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 10127221 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 10127162 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || ||||||||||| || || || ||||||||||| | Sbjct 10127161 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGG 10127102 Query 14014 CTATTAATCGTTCTCC 14029 ||| | ||||| || Sbjct 10127101 CTACAACACGTTCACC 10127086 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 10129385 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 10129327 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 10129326 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 10129267 Query 13643 CATAAAATCAAATGGATT 13660 |||||| |||||||| || Sbjct 10129266 CATAAAGTCAAATGGGTT 10129249 >seq1 Length=248956422 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 14096 TGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 14155 ||||||||| | || || | | ||||| | ||||| | | | ||||| || ||||| Sbjct 161378811 TGTTTCAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGCATCTTTTATGTAAGTGTCAAT 161378870 Query 14156 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCA 14215 ||| | |||||||||||||| ||| |||||||||| || || || || |||| || || Sbjct 161378871 AAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACA 161378930 Query 14216 TCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTAT 14275 | ||||| | || ||||| | ||||| || |||| |||||||| ||||| Sbjct 161378931 GCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTAT 161378990 Query 14276 ACCATCACTAGCTGCAAAAAATGCCA 14301 |||||||| |||||||| || |||| Sbjct 161378991 GCCATCACTTGCTGCAAAGAAAGCCA 161379016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479724533965200