Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq64 248 8e-61 seq11 120 3e-22 seq1 114 1e-20 >seq64 Length=156040895 Score = 248 bits (274), Expect = 8e-61 Identities = 524/775 (68%), Gaps = 10/775 (1%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 || || ||| ||| ||| | |||| ||| || | | | || | || ||||| | Sbjct 44309315 TAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCCATCCTC 44309374 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||| || | ||||| | ||||| |||||||| ||| |||||| ||||| ||| Sbjct 44309375 TGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAATATTCTCC 44309429 Query 13432 ATAAAATCGAATGGATT-TGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 |||| || ||||| | | | | ||| ||| | | |||| ||||| | | | Sbjct 44309430 GTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAA-AACCCAGTTCCAGCATAAG 44309488 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 ||| || || | ||||||||| ||||| ||||| | |||||||| || || || || Sbjct 44309489 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 44309548 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA- 13609 ||||| | | || | ||||||| |||||| ||||| | | | || || Sbjct 44309549 CACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTTC 44309608 Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13669 ||| | | | || | || || | | || ||||| || || || || ||||||| Sbjct 44309609 TCTCACTT-TCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAAT 44309667 Query 13670 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13729 |||| || | ||||| ||||| ||||||||||| || ||||| || | || |||||| Sbjct 44309668 CACAGTGTAAACCCTCTTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCG 44309727 Query 13730 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 13789 ||||||||| || | ||| ||||| | || || || || |||||||| || || || | Sbjct 44309728 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTA 44309787 Query 13790 CTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTC 13849 |||||||||| |||| | ||||| ||| | | || | ||||| ||||| Sbjct 44309788 CTGCAGCAAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 44309847 Query 13850 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT 13909 ||||| || | || || || | | || ||| | ||| || |||||||| | | || Sbjct 44309848 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCG-TTCAATGGCATTGAAGAGAAATT 44309906 Query 13910 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969 || | ||||| | | | ||||| || |||||||| | |||||||||||||| |||| Sbjct 44309907 CCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 44309966 Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCG 14029 ||||||| || || || || || ||||| ||||| | ||||||| || || Sbjct 44309967 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 44310026 Query 14030 AGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084 | ||||| || |||| |||||||| | || |||||||| |||||||| || Sbjct 44310027 GGCTAAATCGCTCCACCAAATTTTCATTTATTATGCCATCACTTGCTGCAAAGAA 44310081 Score = 134 bits (148), Expect = 1e-26 Identities = 301/443 (68%), Gaps = 13/443 (3%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| | ||| || | |||||||| || ||||||||||| || |||||||| | Sbjct 144309692 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144309633 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 || ||||||| |||| |||| || | ||| ||||| || || || || |||||||| Sbjct 144309632 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 144309573 Query 13780 ATTCCCTCAACTGCAGCAAACGCT--ATT--AGTCGTTCTCCAAACGATGCTTTTTTGTT 13835 | | || || ||||| ||| || | ||||||||| | | | |||||| Sbjct 144309572 GTGCTTTCCACCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTTGTT 144309513 Query 13836 TGATATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTG 13894 ||||| | || |||| | | || || || | | | | || ||||| || | Sbjct 144309512 CCCAATCCAACA-CAAGACCCAACCTGCCTTCTTCTTGACACAGGC-ATCGTTTCAATGG 144309455 Query 13895 CATTGAATAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTA 13953 || |||| | | |||| | ||||| || ||| || ||||| |||||||| | || Sbjct 144309454 CACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAA---TATGTGTCAATAAGGAGATTA 144309398 Query 13954 TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCT 14013 | |||||||| ||||||||||||||||| || || || ||||| || || | |||| Sbjct 144309397 TTTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCT 144309338 Query 14014 GACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTA 14073 | || || || |||| ||| |||||||||||| | || ||||||| Sbjct 144309337 GTAATCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACAT 144309278 Query 14074 GCTGCAAAAAATGCC--AATATG 14094 |||||||| || ||| |||||| Sbjct 144309277 GCTGCAAAGAAAGCCAGAATATG 144309255 >seq11 Length=242193529 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 10127221 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 10127162 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || ||||||||||| || || || ||||||||||| | Sbjct 10127161 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGG 10127102 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | ||||| || Sbjct 10127101 CTACAACACGTTCACC 10127086 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 10129385 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 10129327 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 10129326 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 10129267 Query 13431 CATAAAATCGAATGGATT 13448 |||||| || ||||| || Sbjct 10129266 CATAAAGTCAAATGGGTT 10129249 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| || |||||||| | |||||||||||||| ||||||||||| || || || || Sbjct 10124832 ATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 10124773 Query 13990 AAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | ||||||| Sbjct 10124772 AAGCCATAGAAACAGCGGGCTTCTG 10124748 >seq1 Length=248956422 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 13884 TGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 13943 |||||| || | ||||| | | |||| | ||||| | | | ||||| || ||||| Sbjct 161378811 TGTTTCAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGCATCTTTTATGTAAGTGTCAAT 161378870 Query 13944 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACA 14003 ||| | |||||||||||||| ||| ||||||| || || || || || |||| ||||| Sbjct 161378871 AAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACA 161378930 Query 14004 TCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAAT 14063 | ||||||| || || || | ||||| || ||||||||||||| || || Sbjct 161378931 GCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTAT 161378990 Query 14064 ACCATCACTAGCTGCAAAAAATGCCA 14089 |||||||| |||||||| || |||| Sbjct 161378991 GCCATCACTTGCTGCAAAGAAAGCCA 161379016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478585342195920