Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq64 376 3e-99 seq1 150 2e-31 seq29 111 2e-19 seq11 95.1 2e-14 >seq64 Length=156040895 Score = 376 bits (416), Expect = 3e-99 Identities = 649/938 (69%), Gaps = 20/938 (2%) Strand=Plus/Plus Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 41774 |||| |||||| ||| ||| | |||| ||| |||| | || |||| |||||||| Sbjct 44309313 TTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCCATCC 44309372 Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834 | || || || || || | | || || || |||||||||| | ||| ||||| | Sbjct 44309373 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44309427 Query 41835 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 41894 || | || ||||| || | || ||| || |||| |||| ||| || | Sbjct 44309428 CCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44309487 Query 41895 ATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 41954 ||| ||||| | || || || ||| ||||| | |||||||| || || || | Sbjct 44309488 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 44309547 Query 41955 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 42014 | || || | ||| | || || ||||||||||| || || || | | || || Sbjct 44309548 TCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTT 44309607 Query 42015 ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 42074 ||| ||| | || || ||| | | | ||||| |||||||| || || |||| Sbjct 44309608 CTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAAT 44309667 Query 42075 CGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 42134 | ||||| | |||||| ||||| ||||| | ||| |||||||||||||| || ||||| Sbjct 44309668 CACAGTGTAAACCCTCTTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCG 44309727 Query 42135 GGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTA 42194 | || || || || ||||| ||||| || ||||| || |||||||||||||| ||||||| Sbjct 44309728 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTA 44309787 Query 42195 CTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTT 42251 |||| |||||||| | || | || ||||| | | | |||| ||||| Sbjct 44309788 CTGCAGCAAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 44309847 Query 42252 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 42311 |||||||| |||||||| || ||||||||||||||| | |||||||| |||||| | | Sbjct 44309848 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTT-CAATGGCATTGAAGAGAAATT 44309906 Query 42312 ttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAA 42371 |||| || |||||| | || || || || | |||||||||||||| ||||| | Sbjct 44309907 CCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 44309966 Query 42372 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTG 42431 ||||||| ||||| || || || || |||||||| | ||| || |||| ||| ||| | Sbjct 44309967 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 44310026 Query 42432 TACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 42491 | |||||| || | |||||||| || | ||| || ||||| |||||||| || ||| Sbjct 44310027 GGCTAAATCGCTCCACCAAATTTTCATTTATTATGCCATCACTTGCTGCAAAGAAAACCA 44310086 Query 42492 ATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTG----ATA 42547 ||||| |||||||||| | || | ||| || | ||||| || || || Sbjct 44310087 GAACATGGGATATAAAATATCTCTCCT-CGGGCTTCAGGGATTCC---CAGTGCCGAATG 44310142 Query 42548 TCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATA 42607 || || || | || || || || ||||| || || || || ||||| | |||||| Sbjct 44310143 TCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTCATACATC 44310202 Query 42608 TTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 | |||||||||||| || | || ||||| || ||||| Sbjct 44310203 TGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 44310240 Score = 208 bits (230), Expect = 1e-48 Identities = 387/558 (69%), Gaps = 20/558 (4%) Strand=Plus/Minus Query 42077 CAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 42136 ||||| | ||||||||| || ||||| | ||| |||||||| ||||| || ||||| || Sbjct 144309680 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 144309621 Query 42137 CCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACT 42196 || | || || ||||| ||||| | ||||| || |||||||||||| | | ||| || Sbjct 144309620 CCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAGGTGCTTTCCACC 144309561 Query 42197 GCCGCAAAGGCA--AT--AAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCA-CT 42248 |||||||| || || | ||||||| | || | ||| ||||| | Sbjct 144309560 AGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCAATCCAACA 144309501 Query 42249 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 42308 || ||||| | |||||||| || ||||| ||||||||||| |||||| | |||||| Sbjct 144309500 CAAGA-CCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAATGGCACTGAAGAGAA 144309443 Query 42309 AGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAAT 42368 | | |||| || |||||||| |||||| || || | ||| ||| ||||| |||| Sbjct 144309442 ATTCCCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTATTTATTTCAGAAT 144309385 Query 42369 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTT 42428 | |||||||| || || || || || || ||||| || || || |||| ||| |||| Sbjct 144309384 GTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATCTGAACTT 144309325 Query 42429 CTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACG 42488 || | |||| |||| | || ||||| | | ||| || |||| |||||||| || | Sbjct 144309324 CTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGCTGCAAAGAAAG 144309265 Query 42489 CCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTG---- 42544 ||| | ||| |||||||||| ||| || || || | |||| || || Sbjct 144309264 CCAGAATATGGGATATAAAATATCTTTACTCAGG-CTTCAGGGCTTCC---CAGTGCCAA 144309209 Query 42545 ATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATAC 42604 || || || || | || || || | || |||| || || | ||| | || || ||| Sbjct 144309208 ATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCTCTACTTTCTTTTAC 144309149 Query 42605 ATATTCCAGATATCATGA 42622 || ||||| ||||||||| Sbjct 144309148 ATTTTCCAAATATCATGA 144309131 >seq1 Length=248956422 Score = 150 bits (166), Expect = 2e-31 Identities = 236/336 (70%), Gaps = 9/336 (3%) Strand=Plus/Plus Query 42177 AAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCAC 42233 |||||||||| |||| ||||| |||||||| | || | || ||||| | | | Sbjct 161378705 AAAAGAAGATATCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCTCTT 161378764 Query 42234 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 |||| || || | ||||||| |||||||| |||||||| ||||| | Sbjct 161378765 TGTCCCCAATACAACTCAAGGCCCAATTTGCCTTCTTG---ACACAAGGT---GTTTCAA 161378818 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 ||| || |||||| | | |||| || |||||| | || || || || | |||| Sbjct 161378819 TGGTGTTGAAGAGAAATTCCCTTTCTTTGGCATCTTTTATGTAAGTGTCAATAAGGAGAC 161378878 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 |||||||||| ||||| ||||||| ||||| || || || | |||||||| | ||| | Sbjct 161378879 TATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTT 161378938 Query 42414 CGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCAC 42473 | |||| ||| |||||| | |||||| || | || ||||| || ||||| || |||| Sbjct 161378939 CTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCAC 161378998 Query 42474 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 42509 | |||||||| || |||| ||| | |||||||| Sbjct 161378999 TTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 161379034 >seq29 Length=135086622 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || |||||||| || |||||| |||| |||| || || ||||| || | Sbjct 4135265 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 4135206 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| || || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 4135205 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 4135146 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 4135145 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 4135095 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| |||||||||||||| | || |||||||||| | ||| Sbjct 4121752 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 4121693 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| ||||| | | || || ||||||| || Sbjct 4121692 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 4121633 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 4121632 TCCAGGTAAATAGC 4121619 Score = 105 bits (116), Expect = 9e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 4132423 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 4132364 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| |||| || |||||||| || || || ||||| || || | | || | Sbjct 4132363 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 4132304 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 4132303 CTGTTTCTTATACCAT 4132288 Score = 86.0 bits (94), Expect = 8e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 |||| || |||||||| || | | | ||| || ||||| || || || | || |||| Sbjct 4127233 CATAGGTTTCGTATGGGCCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGAGCACCAT 4127174 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||| ||||| || |||| |||||| || || ||||| | || ||||| || | Sbjct 4127173 AATAAATAGTTTCAAAGATCTGCTTATTCAGTAACTGGGCTTCTGCACTCTCAAAAGGGT 4127114 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | | || ||||| || ||||| | ||||| || ||||| || || || | || | Sbjct 4127113 ATCTCATCAGGATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 4127054 Query 71561 TCTTATTAGA 71570 ||||| || Sbjct 4127053 GTTTATTTGA 4127044 >seq11 Length=242193529 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||| | || || || || | ||||||||||||||| ||||| |||||||| ||||| Sbjct 10124839 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 10124780 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || || || || |||||||| | ||| || |||| ||| |||||| | |||||| || Sbjct 10124779 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 10124720 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 41774 |||| |||||| |||| || | |||| ||| ||| | || ||||| |||||||| Sbjct 10129387 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCC 10129328 Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834 | || || || || || | || || || || |||||||||||||||| ||| ||||| | Sbjct 10129327 TCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCT 10129268 Query 41835 CCATGAAATCAAACGGATT 41853 |||| || ||||| || || Sbjct 10129267 CCATAAAGTCAAATGGGTT 10129249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671134351019280