Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq64 149 9e-31 >seq64 Length=156040895 Score = 149 bits (164), Expect = 9e-31 Identities = 493/755 (65%), Gaps = 19/755 (3%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 || |||||| ||| ||||| || ||| | ||||| | ||||| |||| ||||| ||| Sbjct 44310231 TTCCCCATCGAGTACCATGATATCTGGCAGATGTATGAGAAGGCGGAGGCTTCCTTCTGG 44310172 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || ||| ||||| || |||||||||||| | | ||||| | | | | || Sbjct 44310171 ACCACCGAGGAGGTGGACCTGTCCAAGGACATTCGGCACTGGGAATCCCTGAAGCCCGAG 44310112 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||| || | |||||||| || || ||| |||||||| | ||||| || | Sbjct 44310111 ---GAGAGATATTTTATATCCCATGTTCTGGTTTTCTTTGCAGCAAGTGATGGCATAATA 44310055 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCGTGCTT 125236 || || ||| || || ||||| ||| |||| | ||| |||| | || || Sbjct 44310054 AATGAAAATTTGGTGGAGCGATTTAGCCAAATAGTTCAG-ATTACAGAAGCCCGCTGTTT 44309996 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 || || |||||||| || || ||| | || || |||||||| | || ||||| Sbjct 44309995 CTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGA 44309936 Query 125297 CATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGC 125355 || ||||| ||||| ||| | || || ||||| || || || || ||| ||| Sbjct 44309935 CACTTACATCAAAGATCC-CAAAGAAAGGGAATTTCTCTTCAATGCCATTGA-ACGATGC 44309878 Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGT 125415 | | | | || ||||| | |||| | || ||||| | ||| | || || | | Sbjct 44309877 CTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCTACCT 44309818 Query 125416 ACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTG 125475 | | || | | || || || || || ||||| |||||||||||||| ||| ||||| Sbjct 44309817 ATGGTGAACGTGTTGTAGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTG 44309758 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT 125535 | | || || ||||||||||| || |||| ||||| || || ||| || || Sbjct 44309757 CATCGATATTCTGGCTCAAGAAACGAGGACCGATGCCTGGCCTCACGTTTTCCAATGAAC 44309698 Query 125536 TTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATC 125595 |||| |||| ||||| |||||||||| |||| | | || || | ||| | | Sbjct 44309697 TTATTAGCAGAGAAGAGGGTTTACACTGTGATTTTG-CTTGCT--TGATGTTCAAACACC 44309641 Query 125596 TGCGTCCCGAGTGCAGATCCAGC-GATGAAAAGGTCATCAACATTGTAACCGATGCCGTG 125654 || || | | | ||| | || || || || | | || | | | |||| || Sbjct 44309640 TG-GTACACA------AACCATCGGAGGAGAAAGTGAGAGAAATAATTATCAATGCTGTT 44309588 Query 125655 AGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGC 125714 |||||||||||| || || ||||| || | || || | | ||||| ||||| ||| Sbjct 44309587 CAGATAGAACAAGAATTCCTCACCGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGC 44309528 Query 125715 AAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGA 125749 | |||||| | ||||| |||||||||||||| Sbjct 44309527 ACTCTAATGAAGCAATACATTGAGTTTGTGGCAGA 44309493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741053845847280