Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq64 259 4e-64 seq1 105 6e-18 seq22 96.9 3e-15 seq11 82.4 7e-11 >seq64 Length=156040895 Score = 259 bits (286), Expect = 4e-64 Identities = 583/869 (67%), Gaps = 18/869 (2%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| |||| ||||| | ||||| ||||| || |||| | |||||||| ||| Sbjct 44309375 TGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTCAGT-----GAAATATTCTCC 44309429 Query 12923 ATAAAATCGAAAGGATTTT-TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAA 12981 |||| || || || | | | | | | || | | |||| | ||| || | | Sbjct 44309430 GTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCC-AGTTCCAGCATAAG 44309488 Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 |||||| || |||||||| ||||| || ||||||| | || ||||| || || | || Sbjct 44309489 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 44309548 Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101 ||||||| || || || | || | || |||||| | ||| || | ||||| ||| || Sbjct 44309549 CACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTTC 44309608 Query 13102 TCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATC 13161 ||| | | | ||| |||| | | || || || ||||||| || |||||||| Sbjct 44309609 TCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATC 44309668 Query 13162 ACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAG 13221 |||||| || || || ||||| || || || || || ||||| || || || ||||| | Sbjct 44309669 ACAGTGTAAACCCTCTTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGG 44309728 Query 13222 CCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAAC 13281 |||||||| || | ||| ||||| | ||||| ||||| ||||| || || ||||| || Sbjct 44309729 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTAC 44309788 Query 13282 TGCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTC 13340 ||| ||||| |||| |||| | ||||||||| ||| | ||| | | ||||| Sbjct 44309789 TGCAGCAAAGGCTA-CAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 44309847 Query 13341 TGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAt 13400 |||||| | ||| || | || || || ||| ||| || || || || | | | | Sbjct 44309848 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCAT-CGTTCAATGGCATTGAAGAGAAATT 44309906 Query 13401 ttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAA 13460 |||| || ||| || ||||| || || | | ||||||||||| ||||| | Sbjct 44309907 CCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 44309966 Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGG 13520 | |||||||| || |||||||| ||||| ||||| | || |||| | ||||||| Sbjct 44309967 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 44310026 Query 13521 AGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAA 13580 | ||||| || | || ||||| || | ||| || ||||| || ||||| ||| | | Sbjct 44310027 GGCTAAATCGCTCCACCAAATTTTCATTTATTATGCCATCACTTGCTGCAAAGAAAACCA 44310086 Query 13581 GTATGTGCTTAATAAAttttttttC----GTTTTCTGACAACTTTAACCAATCTGGAAAA 13636 | | || ||||| | | | || | ||| | | | ||| | ||| Sbjct 44310087 GAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGGA----TTCCCAGTGCCGAATG 44310142 Query 13637 TCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATC 13696 || || || | || |||||||| |||||| || ||||| | ||||||| ||||||| Sbjct 44310143 TCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTCATACATC 44310202 Query 13697 ATCCATATATCCTTATAAACAATGGGAAA 13725 ||| ||||| | || | ||||| || Sbjct 44310203 TGCCAGATATCATGGTACTCGATGGGGAA 44310231 >seq1 Length=248956422 Score = 105 bits (116), Expect = 6e-18 Identities = 219/321 (68%), Gaps = 10/321 (3%) Strand=Plus/Plus Query 13263 aaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTT 13321 |||| || || |||| ||||| ||||| |||| |||| | ||||||||| ||| | | Sbjct 161378705 AAAAGAAGATATCTTCCACTGCAGCAAAGGCTA-CAACACATTCACCATAGGTAGCCTCT 161378763 Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT-TTTC 13380 || | | || || | |||||| ||||| || | | || || | | |||| Sbjct 161378764 TTGTCCCCAATACAACTCAAGGCCCAATTTGCCTTCT---TGACACA----AGGTGTTTC 161378816 Query 13381 TATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAA 13440 || | ||| || | | | | |||| || ||| || ||||| || || | | Sbjct 161378817 AATGGTGTTGAAGAGAAATTCCCTTTCTTTGGCATCTTTTATGTAAGTGTCAATAAGGAG 161378876 Query 13441 GCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGC 13500 ||||||||||| ||||| | |||||||| || |||||||| |||| ||||| | || Sbjct 161378877 ACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGC 161378936 Query 13501 CTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560 |||| | ||||||||| | ||||| || | |||||||| || ||||| || || Sbjct 161378937 TTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATC 161378996 Query 13561 ACTAGCAGCaaaaaaaGCAAG 13581 ||| || ||||| ||||| || Sbjct 161378997 ACTTGCTGCAAAGAAAGCCAG 161379017 >seq22 Length=145138636 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| || | Sbjct 102218813 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 102218872 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || | |||||| || || ||||| | Sbjct 102218873 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 102218932 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 102218933 CCACCACTCTTTCCCC 102218948 Score = 93.3 bits (102), Expect = 4e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || ||||||||||||||||| ||||| |||||| Sbjct 102208194 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 102208253 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| |||||||||| Sbjct 102208254 ATAAAATCAAAAGGATTTT 102208272 >seq11 Length=242193529 Score = 82.4 bits (90), Expect = 7e-11 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 13421 ATATAAGTATCTATCAATAAG-CTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 || ||||| || || || ||| ||||||||||| ||||| || |||||||| || ||||| Sbjct 10124832 ATGTAAGTGTCAAT-AAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 10124774 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || |||| | ||||||||| Sbjct 10124773 GAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 10124735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430979363998356