Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq1 183 4e-41 seq23 129 8e-25 >seq1 Length=248956422 Score = 183 bits (202), Expect = 4e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || || |||| |||||| ||||| || |||| || |||||||| ||| Sbjct 186676487 GTCTGGAACAACTGCTCATCACCCCATTCAGGATGCTCCTGTTTAAGCACATCGCATACT 186676546 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||||| |||||||| || || |||||||| |||||||||||||| ||||| Sbjct 186676547 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 186676606 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | || | || || || |||| ||||| |||||||| | Sbjct 186676607 ACCTCCTGCCCCACAGCAAACCGTAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 186676666 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 |||| ||||||||| | ||| |||||||| || || ||||| |||| Sbjct 186676667 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 186676715 Score = 150 bits (166), Expect = 3e-31 Identities = 224/318 (70%), Gaps = 0/318 (0%) Strand=Plus/Plus Query 8659 GAGCTCCTTATTGGGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGAC 8718 |||||| || ||||| | ||| | | || ||||| || || ||||| | |||| Sbjct 186674449 GAGCTCTGGATCTGGAACACTGAATGAAGTAAAGGGACAGCCCTTCACGTTATTGCAGAT 186674508 Query 8719 TAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCT 8778 |||||||| || | ||| | |||| ||| ||| ||||| ||||| || || ||||| Sbjct 186674509 GAGAGACTGAATTGAGGCAGTGTTGATGATTTGAAAACCCACTTCTCCACCAAAAGTGCT 186674568 Query 8779 GGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGG 8838 || |||||||| | || || || || || || |||| || ||||| | ||| || || Sbjct 186674569 TGGCTTCCAGTAGGCAGGAGAACATATAACATTACCCATAAGTCCTTTCAAGGAGAATGG 186674628 Query 8839 AGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAA 8898 || || | || | ||| | ||||| |||||||| | || || |||||||| |||| Sbjct 186674629 TGCTCCAACTTCTACCATGGTTTCACCAAAGATGGCATCTGGCCGAGGCTTTTCTACCAG 186674688 Query 8899 GAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGC 8958 | | | |||| ||||||||| |||||||| || || || || | || |||| Sbjct 186674689 AAGGGCAGGATACAGCTCCACAGCATCGATGTCACCATAGAGTGCTTCCAACTCTGCAGA 186674748 Query 8959 GATTTCCTTTTCTCCTGT 8976 ||||||||||||||||| Sbjct 186674749 CATTTCCTTTTCTCCTGT 186674766 Score = 122 bits (134), Expect = 1e-22 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||| || || ||||| || || |||||| ||| ||| | || Sbjct 186677643 TCTTACCCCATGGCCCAGCCCGTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 186677702 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| |||||||| || ||| |||| || |||||||| | ||| | |||||||||||| Sbjct 186677703 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGAGCCCTGGGGATC 186677762 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 || |||| | || | ||||| ||||||||||| | | ||| || || | Sbjct 186677763 AGGGATGAACTTTCTTCTTAGAAGCAATTTTTCCACAATCTCATTTGAATCAGGAAGCTG 186677822 Query 10208 ttttttACCTGGTGAACGAGAA 10229 |||||||||| || ||||| Sbjct 186677823 CTTTTTACCTGAAAAATGAGAA 186677844 Score = 113 bits (124), Expect = 6e-20 Identities = 119/154 (77%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 10287 TCACCTTTGAC-CCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGC 10345 ||||||||||| |||||| ||||| || ||||| | ||| || ||||| || || | Sbjct 186678257 TCACCTTTGACACCCAAG-GGAGTCGGGCAATCATCAGGCACAGGAGGAAGGGCTCTAGT 186678315 Query 10346 GTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGAT 10405 ||||||||||| || ||||| |||||||||||| ||| | ||||| || ||||| | Sbjct 186678316 ATAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAGCATTGTAAGT 186678375 Query 10406 GGGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || || ||||||||||||| ||||| ||||| Sbjct 186678376 TGGTGGACTGTCAATCAAATGTGATCTGGCTGAA 186678409 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| | ||||| ||||| || | ||||||||| || || | Sbjct 186675893 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCC 186675952 Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTTTGTTTTATCAATCT 9439 | | ||| || |||||||| | || ||| || ||| || || | || ||| | Sbjct 186675953 AGCAATATAGAGTTGTTGTAGATAAACTGTTGAT--AGTTGTATTTCTGGTCATGAATTT 186676010 Query 9440 CAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9499 ||| | || |||| || | |||||||||||| | ||||||| || | | |||| Sbjct 186676011 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTGTTAAATTCAGCAGCAATAC 186676070 Query 9500 GATTTTGGTACTGGAA 9515 |||||||||||||||| Sbjct 186676071 GATTTTGGTACTGGAA 186676086 >seq23 Length=138394717 Score = 129 bits (142), Expect = 8e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 ||||||| || ||| ||||| || ||||| || ||||| || |||||||| |||| | Sbjct 122392422 TCTTGACAATGTTAAAGCCCACCTCGCCGCCAAATGTGCTCGGCTTCCAGTACTCCGGAG 122392363 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | |||||| ||| | | ||| || ||||||||||| |||||||| | ||| | || | Sbjct 122392362 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 122392303 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || ||||| | ||| ||| || |||||| | | | ||| | ||| ||||||| Sbjct 122392302 TCTCCCCAAAGATAGAGTTTGGATGGCACTTTTCAAGAAGCAGTCCAGGGTAGAACTCCA 122392243 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || || |||||||| || | || | || || || || ||||| |||||| Sbjct 122392242 ACGCATCAATGTCTCCATACAATTCCTCCAACTCTGCTGCCATCTCCTTCTCTCCT 122392187 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/141 (74%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 10026 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 10083 || || |||||||| |||| | || |||||| | || || || |||| | ||| Sbjct 122381560 GTACTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTT 122381503 Query 10084 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 10143 | || |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| |||| Sbjct 122381502 TGAAGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGG 122381443 Query 10144 GATCGGGAGTGAAGGTCCTCC 10164 | || || |||| |||||| Sbjct 122381442 GGTCAGGTATGAACTTCCTCC 122381422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708519680908320