Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq20 176 7e-40 seq1 127 3e-25 >seq20 Length=170805979 Score = 176 bits (194), Expect = 7e-40 Identities = 195/260 (75%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||||||||||| | | || ||||||||||| || ||||| |||||||||||| Sbjct 26285454 GCTAAGCGTCATCGCAAGGTTTTGCGCGATAACATCCAGGGCATCACTAAGCCAGCTATC 26285395 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || |||||||| || || |||||||| | ||||| | ||||||| |||| | Sbjct 26285394 CGGCGCCTTGCTCGTCGCGGCGGTGTCAAGCGAATTTCTGGCCTTATCTATGAGGAGACT 26285335 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| ||||| | ||||| ||| ||| || | ||| ||| || || || ||| Sbjct 26285334 CGTGGTGTTCTGAAGGTGTTCCTGGAGAACGTGATTCGTGACGCTGTCACTTACACAGAG 26285275 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||| || || | |||||| | ||||| || |||| || || || Sbjct 26285274 CACGCCAAACGCAAGACCGTGACAGCAATGGATGTGGTCTACGCGCTGAAGCGACAGGGA 26285215 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | |||| || || || Sbjct 26285214 CGCACTCTTTACGGCTTCGG 26285195 Score = 152 bits (168), Expect = 8e-33 Identities = 196/268 (73%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | | || || || |||||||| || ||||||||||| || || Sbjct 26021724 GCCAAGCGCCACCGCA-AGGTGTTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCAT 26021782 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || ||||| || || ||||| ||||||| || |||| || |||| Sbjct 26021783 CCGGCGTCTGGCCCGGCGTGGCGGTGTGAAGCGGATCTCTGGTCTGATCTACGAGGAGAC 26021842 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| | || | ||| ||| |||| ||| ||| || |||||| || Sbjct 26021843 TCGCGGGGTGCTCAAGGTGTTTTTGGAGAACGTGATCCGTGACGCTGTCACCTATACGGA 26021902 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 26021903 GCACGCCAAGCGCAAGACAGTCACTGCCATGGACGTGGTCTACGCGCTTAAGCGCCAGGG 26021962 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | ||||||| ||||| ||||| Sbjct 26021963 ACGCACCCTTTATGGCTTTGGCGGTTAA 26021990 Score = 150 bits (166), Expect = 3e-32 Identities = 196/271 (72%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | || || |||||||||||||| |||||||| || || || Sbjct 26027207 GCCAAGCGTCACCGAAAAGTGCTGCGGGATAACATCCAAGGCATCACCAAACCGGCCATT 26027148 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||| | |||||||| || ||||| | || || ||| | ||||| |||| | Sbjct 26027147 CGGCGCCTTGCTAGGCGTGGTGGGGTTAAGCGAATTTCCGGTTTGATTTATGAGGAGACT 26027088 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | || || ||| ||| |||| || || | ||| || ||| Sbjct 26027087 CGTGGCGTTCTCAAGGTGTTTCTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGAG 26027028 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||||||||| |||||||| | || || || | || |||||||| Sbjct 26027027 CACGCCAAGCGCAAGACTGTCACTGCCATGGATGTGGTTTACGCGCTCAAGCGTCAAGGA 26026968 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | | || || || || ||||||||| Sbjct 26026967 CGCACTCTGTACGGCTTCGGCGGTTAATCTT 26026937 Score = 145 bits (160), Expect = 1e-30 Identities = 188/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||| | || || ||||||||||| || || || || || ||||| Sbjct 26103993 GCTAAGCGCCATCGTAAGGTGCTCCGGGATAACATCCAGGGCATTACAAAACCGGCTATT 26104052 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||| || ||||| |||||||| | || || | ||||||| |||| | Sbjct 26104053 CGCCGTTTGGCTCGGCGCGGTGGCGTCAAGCGCATTTCCGGTCTTATCTATGAGGAGACT 26104112 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | ||| | ||| |||||| | || || || |||||| ||| Sbjct 26104113 CGAGGTGTGCTTAAGGTTTTCTTAGAGAACGTTATTCGAGACGCCGTCACCTATACGGAG 26104172 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || || |||||||| |||||||| | || ||||| | |||||||| || Sbjct 26104173 CACGCCAAGCGCAAAACTGTCACAGCCATGGATGTAGTATATGCCCTAAAACGTCAGGGG 26104232 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||| || || Sbjct 26104233 CGCACTCTGTATGGCTTCGG 26104252 Score = 141 bits (156), Expect = 1e-29 Identities = 195/270 (72%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| || || || || |||||||||||||| || || |||||||| || | Sbjct 26204689 CGCTAAGCGTCACCGTAAGGTC-CTGCGAGATAACATCCAGGGCATTACCAAGCCTGCCA 26204747 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || |||||||| || || |||||||| | ||||| | |||| || |||| Sbjct 26204748 TCCGGCGCCTTGCTCGTCGCGGGGGTGTCAAGCGCATTTCTGGTCTCATCTACGAGGAGA 26204807 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | ||| ||||| | || || | | ||| || | ||||||| | || || | Sbjct 26204808 CTCGCGGGGTTCTGAAGGTGTTTCTGGAAAACGTGATTCGTGATGCTGTGACTTACACGG 26204867 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||||| ||||| || || | |||||| | ||||| || |||| | || | Sbjct 26204868 AGCACGCCAAACGCAAGACAGTGACAGCGATGGATGTGGTCTACGCGCTGAAGAGACAGG 26204927 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | || | |||| || || || | |||| Sbjct 26204928 GACGCACTCTTTACGGCTTCGGCGGCTAAT 26204957 Score = 138 bits (152), Expect = 2e-28 Identities = 187/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | | || || || || ||||| || ||||||||||| || || Sbjct 27824169 CGCTAAGCGCCACCGTAAAGTACTGCGCGACAATATCCAGGGCATCACCAAGCCGGCCAT 27824228 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| || || || || ||||| |||| || | |||| || |||| Sbjct 27824229 CCGGCGCCTTGCTCGCCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 27824288 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | ||||| ||| ||| |||| || || | |||||| || Sbjct 27824289 TCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTGACCTATACAGA 27824348 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| |||||||| | ||||| || | || || || || Sbjct 27824349 GCACGCCAAGCGCAAGACGGTCACCGCCATGGATGTGGTCTACGCGCTCAAGCGCCAGGG 27824408 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || ||||| || Sbjct 27824409 CCGCACCCTCTACGGTTTCGG 27824429 Score = 138 bits (152), Expect = 2e-28 Identities = 187/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | | || || || || ||||| || ||||||||||| || || Sbjct 27831483 CGCTAAGCGCCACCGTAAAGTACTGCGCGACAATATCCAGGGCATCACCAAGCCGGCCAT 27831424 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| || || || || ||||| |||| || | |||| || |||| Sbjct 27831423 CCGGCGCCTTGCTCGCCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 27831364 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | ||||| ||| ||| |||| || || | |||||| || Sbjct 27831363 TCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTGACCTATACAGA 27831304 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| |||||||| | ||||| || | || || || || Sbjct 27831303 GCACGCCAAGCGCAAGACGGTCACCGCCATGGATGTGGTCTACGCGCTCAAGCGCCAGGG 27831244 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || ||||| || Sbjct 27831243 CCGCACCCTCTACGGTTTCGG 27831223 Score = 136 bits (150), Expect = 6e-28 Identities = 189/262 (72%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | | || || || || |||||||||||||||||||| |||| Sbjct 26189032 CGCCAAGCGTCACCGTA-AGGTATTGCGTGACAATATCCAAGGAATCACCAAGCCCGCTA 26188974 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||| || || || ||||||||| | ||||| | | ||||| || | Sbjct 26188973 TCCGCCGCCTGGCTCGCCGCGGCGGCGTCAAGCGTATTTCTGGCCTCATTTATGAGGAAA 26188914 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || |||| | ||||| | | || |||| |||||| || ||| || | Sbjct 26188913 CTCGCGGAGTGCTGAAAGTTTTCCTGGAAAATGTAATCCGCGATGCTGTCACCTACACGG 26188854 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| ||||| ||||| ||||| ||||||| | || || || | || || || | Sbjct 26188853 AACACGCCAAACGCAAGACAGTCACAGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 26188794 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | ||||||| || || Sbjct 26188793 GACGCACTCTTTATGGCTTCGG 26188772 Score = 131 bits (144), Expect = 3e-26 Identities = 185/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || |||||||||||||| || Sbjct 27139354 GCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGTATCACCAAGCCAGCCATT 27139413 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||||| || || || || ||||| | ||||| | ||||||| |||| Sbjct 27139414 CGGCGCCTTGCTCGCCGCGGCGGCGTGAAGCGCATTTCTGGCCTCATCTATGAGGAGACC 27139473 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || |||||| | ||||| ||| ||| |||| || || | ||| || ||| Sbjct 27139474 CGCGGAGTGTTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGAG 27139533 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| | ||||| || | || || || ||| Sbjct 27139534 CACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGC 27139593 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||| || || Sbjct 27139594 CGCACCCTCTATGGCTTCGG 27139613 Score = 120 bits (132), Expect = 5e-23 Identities = 183/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| | ||| || || ||||| || || ||||||||||| || || Sbjct 27873466 CGCTAAGCGCCACCGCAAAGTTCTGCGCGACAACATTCAGGGCATCACCAAGCCCGCCAT 27873407 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| || || ||||| |||| || | | || || |||| Sbjct 27873406 CCGACGCCTGGCACGGCGTGGAGGCGTTAAGCGCATCTCAGGCCTTATATACGAGGAGAC 27873347 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | || | || | ||| || |||| ||||| | ||| || || Sbjct 27873346 ACGCGGAGTTCTTAAAGTGTTTTTGGAGAATGTAATCCGCGATGCAGTTACCTACACGGA 27873287 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| ||||| ||||| ||||||| | || || || | || || || || Sbjct 27873286 GCACGCCAAACGCAAGACAGTCACAGCCATGGACGTGGTTTACGCGCTCAAGCGCCAGGG 27873227 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | ||||| ||||| Sbjct 27873226 CCGCACCCTGTATGGCTTTGG 27873206 >seq1 Length=248956422 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | |||| |||| ||||| || || ||||||||||| || | Sbjct 149832729 CGCTAAGCGCCACCGCA-AGGTCTTGAGAGACAACATTCAGGGCATCACCAAGCCTGCCA 149832787 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||| ||||| || || ||||| ||||||| | | || || |||| Sbjct 149832788 TTCGGCGTCTAGCTCGGCGTGGCGGCGTTAAGCGGATCTCTGGCCTCATTTACGAGGAGA 149832847 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| | ||||| ||| || || | || || || ||| |||| Sbjct 149832848 CCCGCGGTGTGCTGAAGGTGTTCCTGGAGAATGTGATTCGGGACGCAGTCACCTACACCG 149832907 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| |||||||| | || || || | || || || | Sbjct 149832908 AGCACGCCAAGCGCAAGACCGTCACAGCCATGGATGTGGTGTACGCGCTCAAGCGCCAGG 149832967 Query 16671 GCCG 16674 | || Sbjct 149832968 GGCG 149832971 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | |||| |||| ||||| || || ||||||||||| || | Sbjct 149861087 CGCTAAGCGCCACCGCA-AGGTCTTGAGAGACAACATTCAGGGCATCACCAAGCCTGCCA 149861029 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||| ||||| || || ||||| ||||||| | | || || |||| Sbjct 149861028 TTCGGCGTCTAGCTCGGCGTGGCGGCGTTAAGCGGATCTCTGGCCTCATTTACGAGGAGA 149860969 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| | ||||| ||| || || | || || || ||| |||| Sbjct 149860968 CCCGCGGTGTGCTGAAGGTGTTCCTGGAGAATGTGATTCGGGACGCAGTCACCTACACCG 149860909 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| |||||||| | || || || | || || || | Sbjct 149860908 AGCACGCCAAGCGCAAGACCGTCACAGCCATGGATGTGGTGTACGCGCTCAAGCGCCAGG 149860849 Query 16671 GCCG 16674 | || Sbjct 149860848 GGCG 149860845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074671530554