Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq64 208 8e-49 seq11 109 6e-19 seq22 95.1 1e-14 seq1 95.1 1e-14 >seq64 Length=156040895 Score = 208 bits (230), Expect = 8e-49 Identities = 536/813 (66%), Gaps = 22/813 (3%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || ||||||| ||| | ||| ||| |||| | |||||| | |||| Sbjct 44309309 TTCATTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCC 44309368 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| | || || || || ||||||| | ||| ||| Sbjct 44309369 ATCCTCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATA 44309423 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 ||| |||| |||||||| | || | || | || || |||||||||| | Sbjct 44309424 TTCTCCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCC-AG 44309482 Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 |||| ||| ||||| ||||| || || ||||| ||||| |||||||| || || Sbjct 44309483 CATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAAT 44309542 Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420 | || ||||| | || | || | || || |||||| || || | | ||| Sbjct 44309543 GAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAAT 44309602 Query 21421 TATATTTATTA-----TCCTA-GATGTACTAGGGGGATACAATAATTGTTTAAACATCAA 21474 ||| | | | | |||| |||| | | ||| | ||||| |||||||| Sbjct 44309603 TATTTCTCTCACTTTCTCCTCCGATGGTTTGTG----TACCAGG--TGTTTGAACATCAA 44309656 Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 || ||||||||||| || ||||| || || || || || | |||||| ||||| || | Sbjct 44309657 GCAAGCAAAATCACAGTGTAAACCCTCTTCTCTGCTAATAAGTTCATTGGAAAACGTGAG 44309716 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594 || ||||| ||||| || || | ||| ||||| || ||||| | || |||||||| Sbjct 44309717 GCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAA 44309776 Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAA 21654 ||||| || || |||||||| || || | |||||||| || |||| ||||| ||| Sbjct 44309777 GATGCCTTCTACTGCAGCAAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCC 44309836 Query 21655 TATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTT 21714 ||||| ||||| | |||||| | || | |||| || || ||||| || || Sbjct 44309837 AATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT-TCAATGGCATT 44309895 Query 21715 TAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774 || ||| | |||| | ||| | ||| ||||||||| Sbjct 44309896 GAAGAGAAATTCCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACAT 44309955 Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834 |||||||||||| ||||| || || || || || || || ||||| | || |||| | Sbjct 44309956 TTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAAT 44310015 Query 21835 TTGAAC-CTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGG 21893 ||||| | | | |||||| | |||| |||||||||| ||| |||||||| || | Sbjct 44310016 CTGAACTATTTGGCT-AAATCGCTCCACCAAATTTTCATTTATTATGCCATCACTTGCTG 44310074 Query 21894 CAAAAAATGCCAATATATTTTTTATAAAATATC 21926 |||| || ||| | || ||||||||||| Sbjct 44310075 CAAAGAAAACCAGAACATGGGATATAAAATATC 44310107 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 21773 ATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAA 21832 |||||||||||||| |||||||| || || || || || || || || | |||| | Sbjct 144309394 ATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTA 144309335 Query 21833 CATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCG 21892 ||||| || | |||| ||| |||||||||||| || ||| ||||||| || Sbjct 144309334 ATCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGCT 144309275 Query 21893 GCAAAAAATGCCAATATATTTTTTATAAAATATCGTT 21929 ||||| || |||| |||| ||||||||||| || Sbjct 144309274 GCAAAGAAAGCCAGAATATGGGATATAAAATATCTTT 144309238 >seq11 Length=242193529 Score = 109 bits (120), Expect = 6e-19 Identities = 110/142 (77%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| || || || | ||||||||||||||| | || ||||| | ||||| || || Sbjct 10127219 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10127160 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 | ||| ||||| |||||||| | || |||||||||||||| || || |||||||| || Sbjct 10127159 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 10127100 Query 21620 ACTAATCGTTCACCGTATGTAG 21641 || | |||||||| ||| ||| Sbjct 10127099 ACAACACGTTCACC-TATTTAG 10127079 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | ||||||| | |||| Sbjct 10129391 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 10129332 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||||||||||| ||| ||| Sbjct 10129331 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 10129272 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| |||||||| || || Sbjct 10129271 TTCTCCATAAAGTCAAATGGGTTCTC 10129246 >seq22 Length=145138636 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 21123 TTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCA 21182 || |||||||||| ||||| || | ||| || |||||| ||| || ||||| | | | Sbjct 102208129 TTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCTGCCATAACTGCAA 102208188 Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242 ||||| || ||||| ||| || || |||||||| |||||||| || || || Sbjct 102208189 AACGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGT 102208248 Query 21243 ATTCCATAAAATCAAATGGATTTTC 21267 ||||||||||||||| |||||||| Sbjct 102208249 TTTCCATAAAATCAAAAGGATTTTC 102208273 >seq1 Length=248956422 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 ||||||||||||||||||| | ||||| || || || || || | || ||||| | || Sbjct 161378877 ACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGC 161378936 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 |||| | ||||| || |||||| | ||||||||||||||||||| ||||| Sbjct 161378937 TTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATC 161378996 Query 21886 ACTGGCGGCAAAAAATGCCA 21905 ||| || ||||| || |||| Sbjct 161378997 ACTTGCTGCAAAGAAAGCCA 161379016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531896957016720