Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq64 399 3e-106 seq1 172 7e-38 seq29 111 2e-19 seq22 111 2e-19 seq11 111 2e-19 seq51 93.3 5e-14 >seq64 Length=156040895 Score = 399 bits (442), Expect = 3e-106 Identities = 658/941 (70%), Gaps = 26/941 (3%) Strand=Plus/Plus Query 32957 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 33013 |||| |||||| ||| ||| | |||| ||| |||| | || |||| |||||||| Sbjct 44309313 TTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCCATCC 44309372 Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073 | || || || || || | | || || || ||||| |||| | ||| ||||| | Sbjct 44309373 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44309427 Query 33074 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 33133 || | || ||||| || | || ||| || |||| |||| ||| || | Sbjct 44309428 CCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44309487 Query 33134 ATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 33193 ||| || || || || || || ||| ||||| | |||||||| || || || | Sbjct 44309488 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 44309547 Query 33194 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 33253 | || || | ||| | || || ||||||||||| || || |||| | || || Sbjct 44309548 TCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTT 44309607 Query 33254 ATCTAACGGTTTCTTCACTCGGTGGAT---GCAATAAATGTTTAAACATCAAACATGCGA 33310 ||| || ||||| | | || ||| | | | | ||||| |||||||| || || | Sbjct 44309608 CTCTCAC--TTTCTCCTC-CGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAA 44309664 Query 33311 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 33370 |||| ||||| | |||||| ||||| ||||| ||||| |||||||||||||| || |||| Sbjct 44309665 AATCACAGTGTAAACCCTCTTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCA 44309724 Query 33371 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTT 33430 | | || || || || ||||| ||||| || || || || |||||||||||||| |||| Sbjct 44309725 TCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTT 44309784 Query 33431 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACT 33487 |||||||||||||||| | || | || ||||| | | | |||| ||||| Sbjct 44309785 CTACTGCAGCAAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGC 44309844 Query 33488 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33547 |||||||| |||||||| || ||||||||||||||| | |||||||| |||||| Sbjct 44309845 GCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTT-CAATGGCATTGAAGAGAA 44309903 Query 33548 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33607 | | |||| || |||||| | ||||| || || | |||||||||||||| |||| Sbjct 44309904 ATTCCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAAT 44309963 Query 33608 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 33667 | |||||||| ||||| || || || || |||||||| | || || |||||||| ||| Sbjct 44309964 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTA 44310023 Query 33668 CTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 33727 | | |||||| ||| ||||||||||||| | ||| || ||||| |||||||| || Sbjct 44310024 TTTGGCTAAATCGCTCCACCAAATTTTCATTTATTATGCCATCACTTGCTGCAAAGAAAA 44310083 Query 33728 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG---- 33783 ||| ||||| |||||||||| | || || || | || ||||| || || Sbjct 44310084 CCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAG-GGATTCC---CAGTGCCGA 44310139 Query 33784 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 33843 || || || || | || || || || ||||| || || ||||| ||||| | |||| Sbjct 44310140 ATGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTCATAC 44310199 Query 33844 ATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 || | |||||| |||| || | ||| ||||| || ||||| Sbjct 44310200 ATCTGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 44310240 Score = 208 bits (230), Expect = 9e-49 Identities = 319/447 (71%), Gaps = 12/447 (3%) Strand=Plus/Minus Query 33316 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 33375 ||||| | |||||| || || ||||| ||||| |||||||| ||||| || ||||| || Sbjct 144309680 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 144309621 Query 33376 CCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACT 33435 || | || || ||||| ||||| | || || || |||||||||||| | | ||| || Sbjct 144309620 CCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAGGTGCTTTCCACC 144309561 Query 33436 GCAGCAAAGGCA--AT--AAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCA-CT 33487 |||||||| || || | ||||||| | || | ||| ||||| | Sbjct 144309560 AGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCAATCCAACA 144309501 Query 33488 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33547 || ||||| | |||||||| || ||||| ||||||||||| |||||| | |||||| Sbjct 144309500 CAAGA-CCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAATGGCACTGAAGAGAA 144309443 Query 33548 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33607 | | |||| || |||||||| ||| || || || | ||| ||| ||||| |||| Sbjct 144309442 ATTCCCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTATTTATTTCAGAAT 144309385 Query 33608 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 33667 | |||||||| || || || || || || ||||| || | || |||||||| |||| Sbjct 144309384 GTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATCTGAACTT 144309325 Query 33668 CTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 33727 || | |||| ||||| |||| ||||||| | ||| || |||| |||||||| || | Sbjct 144309324 CTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGCTGCAAAGAAAG 144309265 Query 33728 CCAATACATGTTTTATAAAATATTTTT 33754 ||| | ||| |||||||||| ||| Sbjct 144309264 CCAGAATATGGGATATAAAATATCTTT 144309238 >seq1 Length=248956422 Score = 172 bits (190), Expect = 7e-38 Identities = 241/336 (72%), Gaps = 9/336 (3%) Strand=Plus/Plus Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGC 33472 |||||||||| |||| |||||||||||||| | || | || ||||| | | | Sbjct 161378705 AAAAGAAGATATCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCTCTT 161378764 Query 33473 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 |||| || || | ||||||| |||||||| |||||||| ||||| | Sbjct 161378765 TGTCCCCAATACAACTCAAGGCCCAATTTGCCTTCTTG---ACACAAGGT---GTTTCAA 161378818 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 ||| || |||||| | | |||| || |||||| | ||||| || || | |||| Sbjct 161378819 TGGTGTTGAAGAGAAATTCCCTTTCTTTGGCATCTTTTATGTAAGTGTCAATAAGGAGAC 161378878 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 |||||||||| ||||| ||||||| ||||| || || || | |||||||| | || | Sbjct 161378879 TATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTT 161378938 Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCAC 33712 | |||||||| |||||| | |||||| ||| |||| |||||||| ||||| || |||| Sbjct 161378939 CTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCAC 161378998 Query 33713 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 33748 | |||||||| || |||| ||| | |||||||| Sbjct 161378999 TTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 161379034 >seq29 Length=135086622 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||| | Sbjct 4135265 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 4135206 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 4135205 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 4135146 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 4135145 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 4135095 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 4132423 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 4132364 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 4132363 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 4132304 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 4132303 CTGTTTCTTATACCATA 4132287 Score = 105 bits (116), Expect = 8e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| |||||||||||||| | || |||||||||| | Sbjct 4121756 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 4121697 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 4121696 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 4121637 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 4121636 AGGCTCCAGGTAAATAGC 4121619 >seq22 Length=145138636 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || ||||| |||||||| |||||||| ||||| || || | ||| || Sbjct 102218815 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 102218874 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || ||||| || ||||| | ||||||||| ||||||||||| Sbjct 102218875 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGGC 102218933 >seq11 Length=242193529 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| || ||||| ||||| || ||||| || || || || | Sbjct 10127221 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 10127162 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || || |||||||| || ||||| ||||||||||||| Sbjct 10127161 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGG 10127102 Query 33446 C 33446 | Sbjct 10127101 C 10127101 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||| | ||||| || || | ||||||||||||||| ||||| |||||||| ||||| Sbjct 10124839 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 10124780 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 10124779 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 10124720 Query 33684 CGCC 33687 | || Sbjct 10124719 CACC 10124716 >seq51 Length=58617616 Score = 93.3 bits (102), Expect = 5e-14 Identities = 180/259 (69%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 31047 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATTTGTACTATCTAGAGATTGTACTTCT 31104 ||| || || ||||| ||| ||||| ||| | ||| ||| | || ||| |||||| Sbjct 52451934 TCCGGTAGAGCCAAAACCTCCTGATCCCCTTTTGGTGTC--ATCCAAAGCTTGAACTTCT 52451877 Query 31105 TCCAGTTCTGGAT-AATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATT 31163 || | |||||||| || | || |||| | | || ||||| || |||| ||| || | || Sbjct 52451876 TCTATTTCTGGATTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCTTTTTT 52451817 Query 31164 T-ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAAT 31222 | || | |||| | ||| | | ||||| || | || || | ||||| ||||||| Sbjct 52451816 TGACTTCAAACTTTTCTTTGCAAAAATTAAAGAGTACAACACCAACATTTCCTCTATAAT 52451757 Query 31223 CTTCGTCTATTACACCGCCTCCTATAT---CAATGCCTTTTAGGGACAGACCAGACCTAG 31279 |||| ||| | | ||| |||||| || ||| | |||| | || |||||||| | Sbjct 52451756 CTTCATCTGTGATACCAGCTCCTACATCAACAAAGTGTTTTGCAGCCAAGCCAGACCTTG 52451697 Query 31280 GAGCTATTCTACCATAGCA 31298 |||||| ||| ||||| || Sbjct 52451696 GAGCTACTCT-CCATAACA 52451679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622942699206480