Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq64 105 2e-17 seq29 100 7e-16 seq11 95.1 3e-14 >seq64 Length=156040895 Score = 105 bits (116), Expect = 2e-17 Identities = 151/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| |||||||||||||| || ||||| | |||| || | | | | ||| Sbjct 44309869 AAGAAGAAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCTACCTATGGTGAA 44309810 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 ||| || | || ||||||| || |||||||| ||||||||||| | ||| | || Sbjct 44309809 CGTGTTGTAGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATA 44309750 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||||| || ||||| | | ||||| || || |||||||| ||||| | |||||| Sbjct 44309749 TTCTGGCTCAAGAAACGAGGACCGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGC 44309690 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 |||| |||||| | || |||||||| || Sbjct 44309689 AGAGAAGAGGGTTTACACTGTGATTTTGCTTG 44309658 >seq29 Length=135086622 Score = 100 bits (110), Expect = 7e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| || ||||| || || |||||| Sbjct 4123220 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACGGAAACAGGCACCCCGTATATG 4123279 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || || || | Sbjct 4123280 CTCTACAAAGATTCCTGTAATCGAAAGAGCAACCAGCAGAACCTGGGAACCATCAAATGC 4123339 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || |||||| Sbjct 4123340 AGCAACCTGTGCACAGAAATAGTGGAGTACACC 4123372 >seq11 Length=242193529 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/134 (77%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-C 22547 |||||| || | || ||||||| || ||||||||||||||||| || | ||||| | | Sbjct 10127089 GAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATTTTCTTTTCCGGTTC-TTTTGCGTC 10127147 Query 22548 AATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAAT 22607 || || ||||| || ||||| | | | ||||| || || || ||||| ||||| | || Sbjct 10127148 GATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTAT 10127207 Query 22608 TAGCCGAGATGAGG 22621 |||| ||||||||| Sbjct 10127208 TAGCAGAGATGAGG 10127221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303343947851996