Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq20 91.5 1e-13 seq46 84.2 2e-11 >seq20 Length=170805979 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| ||||| | ||||| || |||| || ||||| ||| |||| | || || Sbjct 113581498 AAAATGCAGATTTTCTTGAAAACCCTTACGGAGAAGACCATCACCCTCGAGGCTGAACCC 113581557 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || ||||| ||||| | || |||| Sbjct 113581558 TTGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 113581617 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| || || ||| | ||||||| || || | || || Sbjct 113581618 CAGCAAAGACTGATCTTTGCTGGAAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 113581677 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 | |||||||| ||||||||| | ||| | ||||||||| | || || || Sbjct 113581678 AGTATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 113581727 >seq46 Length=83257441 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| ||||| | || |||||||||||||| || | ||| ||||| ||| | ||| Sbjct 10258855 GATAAGGAAGGAATTCCTCCTGATCAGCAAAGACCGATCTTTGCTGGCAAGCAACTGGAA 10258914 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| || || | | || || |||||||||||||||||| | ||| | |||||| Sbjct 10258915 GATGGATGTACTTTGTCTGGCTACAATATTCAAAAAGAGTCTACTCTTCATTTTGTGTTG 10258974 Query 115499 AGATTGCGAGGAGG 115512 ||| |||| || || Sbjct 10258975 AGACTGCGTGGTGG 10258988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425341003717360