Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq46 111 1e-19 seq22 96.9 3e-15 seq31 91.5 1e-13 >seq46 Length=83257441 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| || |||||||| || ||||||||||| | Sbjct 16382362 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 16382303 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| || ||||| ||| | || |||| ||| ||||| ||| Sbjct 16382302 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 16382243 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| ||||| || || || || |||||| | | | ||||| | ||||||| Sbjct 16382242 ATGCCTTCTTTATCCTGGATCTTGGC--CTTCACATTTTCGATGGTGTCACTGGGCTCCA 16382185 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| || |||||||| || || || || |||||||| Sbjct 16382184 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 16382136 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| |||||| || ||||| || || ||||||||||| | Sbjct 22204547 CCACCTCTCAGACGCAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 22204488 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | | | | || |||| || ||||| ||| | || |||| ||| ||||| || Sbjct 22204487 AGACTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 22204428 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| ||||| || || || || |||||| | | | ||||| | ||||||| Sbjct 22204427 ATGCCTTCTTTATCTTGGATCTTGGC--CTTCACATTTTCGATGGTGTCACTGGGCTCCA 22204370 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| || |||||||| || || || || |||||||| Sbjct 22204369 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 22204321 Score = 100 bits (110), Expect = 2e-16 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| || |||||||| || ||||||||||| | Sbjct 16382134 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 16382075 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| || ||||| ||| | || |||| ||| ||||| || Sbjct 16382074 AGAGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 16382015 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || || || || || || |||||| | | | ||||| | ||||||| Sbjct 16382014 ATGCCTTCCTTATCCTGGATCTTGGC--CTTCACATTTTCGATGGTGTCACTGGGCTCCA 16381957 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | ||||||||| || ||||| || ||||| || || |||||||||||| Sbjct 16381956 CCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTTG 16381904 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/229 (70%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| || |||||||| || ||||||||||| | Sbjct 22204774 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 22204715 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| || ||||| ||| | || |||| ||| || | | || Sbjct 22204714 AGAGTACCGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGAT-CGGGGGG 22204656 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| ||||| || || || || |||||| | | | ||||| | ||||||| Sbjct 22204655 ATGCCTTCTTTATCTTGGATCTTGGC--CTTCACATTTTCGATGGTGTCACTGGGCTCCA 22204598 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| || |||||||| || || || || |||||||| Sbjct 22204597 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 22204549 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| || ||||| || || ||||||||||| | | || | | || Sbjct 16382576 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATC 16382517 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| ||||| || | ||| ||||| || Sbjct 16382516 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATC 16382457 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | ||||||| |||| |||||| Sbjct 16382456 TTGGATCTTGGC--CTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATG 16382399 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || |||||||| || || || || |||||||| Sbjct 16382398 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 16382364 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| |||||| || ||||| || || ||||||||||| | | | | | || Sbjct 22204305 CAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGACTGCGGCCATC 22204246 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCA-CGCCCTCTTTGT 16841 ||| || ||||| ||| | || |||| ||| |||| |||||| | ||| ||||| | Sbjct 22204245 TTCCCGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGT-CACAGGGATTGCCTTCTTTAT 22204187 Query 16842 C--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGAT 16899 | || || ||| || || | | | |||| | | ||||||| ||| | |||||| Sbjct 22204186 CTTGGATTTTGGCT--TTGACATTTTCGATAGTGGCACTGGGCTCCACTTCAAGGGTGAT 22204129 Query 16900 GGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | | || ||||| || ||||| || || ||| |||||||| Sbjct 22204128 GATCTTGCCGGTAAGGGTTTTCACGAAGATCCGCATTTTG 22204089 >seq22 Length=145138636 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/227 (69%), Gaps = 18/227 (8%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| |||| ||||| ||||||||||| || ||||||||||| | Sbjct 123237060 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAG 123237001 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| |||||||||||| || || ||||| ||||| || Sbjct 123237000 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAGTATCAGACGCTGCTGGTCAGGTGGG 123236941 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| ||||| |||| || || |||||| | Sbjct 123236940 ATGCCCTCCTTGTCCTGAATTT-----------TGGC-------GTTGCTGGGCTCGATC 123236899 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || || || || || ||||| |||||||| Sbjct 123236898 TCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 123236852 >seq31 Length=133275309 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/234 (69%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| |||||||| || || ||||||||||| | Sbjct 124911948 CCCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 124912007 Query 16768 CATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCA 16823 || ||| |||||| |||| ||||| || ||| | || | || ||| ||||| Sbjct 124912008 CAGGGT----GCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAG 124912063 Query 16824 CAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGG 16881 ||| | ||| || ||||| || ||||| ||| || | | | ||||| | || Sbjct 124912064 GAGGGATGCCTTCCTTGTCTTGGATCTTTGC--CTTGACATTCTCAATGGTGTCACTCGG 124912121 Query 16882 CTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| | |||||||| || || ||||| || || || || |||||||| Sbjct 124912122 CTCCACTTCGAGAGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 124912175 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/234 (69%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| |||||||| || || ||||||||||| | Sbjct 124912176 CCCACCTCTAAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 124912235 Query 16768 CATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCA 16823 || ||| |||||| |||| ||||| || ||| | || | || ||| ||||| Sbjct 124912236 CAGGGT----GCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAG 124912291 Query 16824 CAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGG 16881 ||| | ||| || ||||| || ||||| ||| || | | | ||||| | || Sbjct 124912292 GAGGGATGCCTTCCTTGTCTTGGATCTTTGC--CTTGACATTCTCAATGGTGTCACTCGG 124912349 Query 16882 CTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| | |||||||| || || ||||| || || || || |||||||| Sbjct 124912350 CTCCACTTCGAGAGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 124912403 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| |||||||| || || ||||||||||| | Sbjct 124913544 CCCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 124913603 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| ||||| || ||| | || |||| ||| ||||| ||| Sbjct 124913604 CAGGGTGCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 124913663 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || || || || ||||| ||| || | | | ||||| | |||||| Sbjct 124913664 GATGCCTTCCTTATCTTGGATCTTTGC--CTTGACATTCTCGATGGTGTCACTGGGCTCA 124913721 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||||||||| || || ||||| || || || || ||||||||| Sbjct 124913722 ACCTCGAGGGTGATGGTCTTACCAGTCAGAGTCTTCACGAAGATCTGCATT 124913772 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/234 (69%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| |||||||| || || ||||||||||| | Sbjct 124912404 CCCACCTCTAAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 124912463 Query 16768 CATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCA 16823 || ||| |||||| |||| ||||| || ||| | || | || ||| ||||| Sbjct 124912464 CAGGGT----GCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAG 124912519 Query 16824 CAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGG 16881 ||| | ||| || ||||| || ||||| ||| || | | | ||||| | || Sbjct 124912520 GAGGGATGCCTTCCTTGTCTTGGATCTTTGC--CTTGACATTCTCAATGGTGTCACTCGG 124912577 Query 16882 CTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || | |||||||| || || ||||| || || || || |||||||| Sbjct 124912578 CTCCACCTCGAGAGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 124912631 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| |||| |||||||| || || ||||||||||| | Sbjct 124912632 CCCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGA 124912691 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| ||||| || ||| | || | || ||| ||||| ||| Sbjct 124912692 CAGGGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGG 124912751 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || ||||| || ||||| ||| || | | | ||||| | |||||| Sbjct 124912752 GATGCCTTCCTTGTCTTGGATCTTTGC--CTTGACATTCTCAATGGTGTCACTCGGCTCC 124912809 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | |||||||| || || ||||| || || || || |||||||| Sbjct 124912810 ACTTCGAGAGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 124912859 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | ||||||| |||| |||||||| || || ||||||||||| | Sbjct 124913088 CCCACCTCTGAGACGGAGTACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGA 124913147 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| ||||| || ||| | || | || ||| || || ||| Sbjct 124913148 CAGGGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCAGGAGG 124913207 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || || || || ||||| ||| || | | | ||||| | ||||||| Sbjct 124913208 AATGCCTTCCTTATCTTGGATCTTTGC--CTTGACATTCTCGATGGTGTCACTGGGCTCC 124913265 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || ||||| || || || || |||||||| Sbjct 124913266 ACCTCGAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 124913315 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 12/219 (5%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| |||||||| || || ||||||||||| | || ||| ||||| Sbjct 124911735 CAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT----GCGTC 124911790 Query 16783 C----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTT 16838 | |||| ||||| || ||| | || | || ||| || || ||| | ||| || | Sbjct 124911791 CATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGATCAGGAGGGATGCCTTCCT 124911850 Query 16839 TGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGT 16896 | || || ||||| ||| || | | | ||||| | ||||||| || | ||| Sbjct 124911851 TATCTTGGATCTTTGC--CTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGT 124911908 Query 16897 GATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| || || ||||| || || || || || ||||| Sbjct 124911909 GATGGTCTTACCAGTCAGGGTCTTCACGAAGATTTGCAT 124911947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405085146408220