Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq64 268 1e-66 seq1 143 3e-29 seq11 98.7 1e-15 >seq64 Length=156040895 Score = 268 bits (296), Expect = 1e-66 Identities = 538/790 (68%), Gaps = 6/790 (1%) Strand=Plus/Plus Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||| ||| || || ||||| || ||||| || ||| | | |||||||| || | Sbjct 44309484 ATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATG 44309543 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || ||||| | || ||||| | ||| |||| || || ||| || | | | Sbjct 44309544 AGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATT 44309603 Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||||| | ||| | | | |||||| ||||| | | ||| |||| ||||| ||| Sbjct 44309604 ATTTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCA 44309663 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGG 93156 || || |||||||| || |||| || || || | ||||| || || | || || Sbjct 44309664 AAATCACAGTGTAAACCCTCTTCTC-TGCTAATAAGTTCATTGGAAAACGTGAGGCCAGG 44309722 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | | ||||||||||||||||||| ||||| || |||||| ||||||||| || || || Sbjct 44309723 CATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCC 44309782 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 ||| || || ||||| || |||| |||||| || | | || || | ||||| Sbjct 44309783 TTCTACTGCAGCAAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCA 44309842 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 || |||||||| || || ||||| | |||||| | ||| | || || || || || Sbjct 44309843 GCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTT-CAATGGCATTGAAGAG 44309901 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | || | || | | |||| ||||| || || || | ||| |||||||||||| Sbjct 44309902 AAATTCCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGA 44309961 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||| | || ||||| ||||||||||| || |||||||| | ||||| || ||||| || Sbjct 44309962 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAAC 44310021 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 | ||| ||||| ||| || | ||||||||| | ||| ||||| ||||||||| || Sbjct 44310022 TATTTGGCTAAATCGCTCCACCAAATTTTCATTTATTATGCCATCACTTGCTGCAAAGAA 44310081 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATA 93575 | ||| | ||| |||||||| | |||| || || || ||||| | | || | Sbjct 44310082 AACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCGA-A 44310140 Query 93576 GATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA 93635 || || || || || || || ||| ||||| || || || || || || | |||| Sbjct 44310141 TGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTCATACA 44310200 Query 93636 TATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTA 93695 | | ||| || || || || | || || || |||||||| || |||||| || | | Sbjct 44310201 TCTGCCAGATATCATGGTACTCGATGGGGAAGATGACAAAGCGGCAAGGGTTTCCTCTCA 44310260 Query 93696 GTAACGGCTC 93705 | | |||||| Sbjct 44310261 GCAGCGGCTC 44310270 Score = 143 bits (158), Expect = 3e-29 Identities = 376/567 (66%), Gaps = 9/567 (2%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTA 93149 ||| ||||||| |||||||| || || | || || || | ||||| ||||| | Sbjct 144309693 GCAAGCAAAGTAACAGTGTAAACCCTCATCAC-TGCTAATAAGTTCATTGGAAAATGTGA 144309635 Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209 || || | ||||||| ||||||||||||| ||||| | |||||| ||||||||| | Sbjct 144309634 GGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGA 144309575 Query 93210 aTATACCTTCCACGGCTGCAAATGC--CA--CAATACGTTCGGCAAAATTTGCGGAATTA 93265 | | | |||||| ||||| || || ||| |||||| || | || || Sbjct 144309574 AGGTGCTTTCCACCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTTG 144309515 Query 93266 CTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATA 93325 | | ||||| || ||||| | || || ||||| | ||| || | ||||| || Sbjct 144309514 TTCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAATG 144309456 Query 93326 GCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAA 93385 || | || || | || | || | |||| || |||| || || | ||| | Sbjct 144309455 GCACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAAT--ATGTGTCAATAAGGAGATTA 144309398 Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 | ||||||||||| | || || || ||||||||||| || ||||| || | ||| Sbjct 144309397 TTTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCT 144309338 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505 || ||||| ||||||||| |||| || || | ||||||| | ||| ||||| || Sbjct 144309337 GTAATCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACAT 144309278 Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCC 93565 |||||||| ||||||| ||||| |||||||| | | | ||| || || ||| Sbjct 144309277 GCTGCAAAGAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTCC 144309218 Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 || | | | || || || || || || || | | | |||| || || | ||| || Sbjct 144309217 CAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCTCTACT 144309158 Query 93626 TTTTTGTACATATCCCATATGTCTTGA 93652 || || ||||| | ||| || || ||| Sbjct 144309157 TTCTTTTACATTTTCCAAATATCATGA 144309131 >seq1 Length=248956422 Score = 143 bits (158), Expect = 3e-29 Identities = 234/336 (70%), Gaps = 6/336 (2%) Strand=Plus/Plus Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT 93263 |||| || ||| ||||||| || ||||| || |||| || ||| || | | || | Sbjct 161378705 AAAAGAAGATATCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCTCTT 161378764 Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323 | | || || | || ||||||| || || ||| | ||||||| ||||| | Sbjct 161378765 TGTCCCCAATACAACTCAAGGCCCAATTTGCCTT---CTTGACACAAGGT---GTTTCAA 161378818 Query 93324 TAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAG 93383 | | ||| || || | || | || | | |||| |||||| || || || | ||| Sbjct 161378819 TGGTGTTGAAGAGAAATTCCCTTTCTTTGGCATCTTTTATGTAAGTGTCAATAAGGAGAC 161378878 Query 93384 AATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTT 93443 ||||||||||||||| || ||||| ||||||||||| | |||||||| | |||| Sbjct 161378879 TATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTT 161378938 Query 93444 CCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGG 93503 | || ||||| |||||||| ||||| ||| || | |||||||| ||||| ||||| Sbjct 161378939 CTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCAC 161378998 Query 93504 ATGCTGCaaaaaaaGCCAATATATGCTTTATAAAAT 93539 ||||||||| ||||||| | | | |||||||| Sbjct 161378999 TTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 161379034 >seq11 Length=242193529 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 ||||| | || || | ||||||||||||||||||||| ||||| || |||||| ||| Sbjct 10127192 AATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAAGAACCG 10127133 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||||| || || |||||||| || ||||| || |||| |||||| Sbjct 10127132 GAAAAGAAAATGCCTTCCACTGCAGCAAAGGCTACAACACGTTC 10127089 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 |||| |||||| || || || | ||| ||||||||||||||| | || ||||| || Sbjct 10124839 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 10124780 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||||||||| || |||||||| | ||||| || ||||| |||||||| ||||| ||| Sbjct 10124779 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 10124720 Query 93475 TAC 93477 || Sbjct 10124719 CAC 10124717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556856776680720