Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq33 134 1e-26 seq23 122 7e-23 seq31 118 9e-22 seq22 109 5e-19 seq21 109 5e-19 seq14 109 5e-19 seq44 91.5 1e-13 seq51 87.8 2e-12 >seq33 Length=107043718 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||| ||||| || | ||| Sbjct 58141278 AGATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCAAGCCCA 58141337 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 |||| ||| | | || ||||| |||||||| |||||||||||||| ||||| || | Sbjct 58141338 CCGACACCATTTAGAATGTCAAAACCAAAATTCAGGACAAGGAGGGTATCCCACCTGACC 58141397 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| |||||||| || |||| | | |||||| || ||| |||| | |||| Sbjct 58141398 AGCAGCGTCTGATATTTGCTGGGAAACGGCTGGAGGATGGCCACACTCTCTCAGGCTACA 58141457 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||| || ||||| |||||| || | | || |||| |||| || || Sbjct 58141458 ACATCCAGAAAGAGTCCACCCTAAACCTGGTGCTGCGCCTGCGAGGTGG 58141506 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 || ||||||| || | ||| || || | || || ||||| |||| ||||| || | Sbjct 21398920 TAGAGATGCAGATCTCTGTAAAGACCCTCACAGGCAAAACCATCACCCTTGAGGTCCAGC 21398979 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | | || ||| || || ||||| || || || ||||||||||| || ||||| | Sbjct 21398980 CGAGTGACACCAGTGAAAATGTCAAAGCCAAGATCCACGACAAGGAGGGCATCCCACCTG 21399039 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 | || || | ||| ||||||| ||||||||| |||||| ||| || | || || | Sbjct 21399040 ACCAGCAGCATCTGATATTTGTGAACAAACAGTTGGAGGATGGCCGTACTCTTTCAGACT 21399099 Query 22394 ACAACATTCAAAAAGAATCCACC 22416 ||||| || ||||| |||||| Sbjct 21399100 GTAACATCCAGAAAGAGTCCACC 21399122 >seq23 Length=138394717 Score = 122 bits (134), Expect = 7e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||| ||||| || || ||| Sbjct 22012153 AGATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCA 22012212 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || || ||| ||||||||||||||||||||||| || || || Sbjct 22012213 GTGACACCATTGAGAATGTCAGTGCGAAAATTCAAGACAAGGAGGGTATCCCCCCTGACA 22012272 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| ||||||||| |||||||| | |||||| |||||| |||| || |||| Sbjct 22012273 AGCAGCGTCTGATATTTGCCAGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACA 22012332 Query 22397 ACATTCAAAAAGAATCCACC 22416 || | || ||| | ||||| Sbjct 22012333 ACGTCCAGAAACAGCCCACC 22012352 >seq31 Length=133275309 Score = 118 bits (130), Expect = 9e-22 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||| | || || | || || || || |||||||||| ||||| ||| Sbjct 115592985 AGATGCAGATCTTTATGAACACCCTCACGGGCAAGACCATCACTCTTGAGGTGGAGCCCA 115592926 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || || ||||| ||||| |||||||||||||| || | || || | Sbjct 115592925 GTGACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCTGCCTGACC 115592866 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || |||| ||||||| ||||||||| | |||||| || || |||| || || | Sbjct 115592865 AGCAGTGTCTGATATTTGTGGGCAAACAGCTGGAGGATGGCCACAGTCTCTCAGACTAGA 115592806 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| || ||||| |||||| Sbjct 115592805 ACATCCAGAAAGAGTCCACC 115592786 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || ||||| || ||||||| |||||||| | | Sbjct 124912176 GATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACTCTCGAAGTGGAGCCGAG 124912117 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| ||| || ||||||||||| || || || || || || Sbjct 124912116 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 124912057 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| || |||||| | || ||| |||||| | || || ||||| Sbjct 124912056 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 124911997 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || ||||| |||||| Sbjct 124911996 CATCCAGAAAGAGTCCACC 124911978 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || ||||| || ||||||| |||||||| | | Sbjct 124912404 GATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACTCTCGAAGTGGAGCCGAG 124912345 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| ||| || ||||||||||| || || || || || || Sbjct 124912344 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 124912285 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| || |||||| | || ||| |||||| | || || ||||| Sbjct 124912284 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 124912225 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || ||||| |||||| Sbjct 124912224 CATCCAGAAAGAGTCCACC 124912206 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || ||||| || ||||||| |||||||| | | Sbjct 124912860 GATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACTCTCGAAGTGGAGCCGAG 124912801 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| ||| || ||||||||||| || || || || || || Sbjct 124912800 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 124912741 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || |||||||| |||||| | || ||| || ||| | || || ||||| Sbjct 124912740 GCAGAGGTTGATCTTTGCCGGAAAACAGCTGGAAGATGGTCGTACCCTGTCTGACTACAA 124912681 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || ||||| |||||| Sbjct 124912680 CATCCAGAAAGAGTCCACC 124912662 Score = 98.7 bits (108), Expect = 8e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || ||||| || ||||||| || ||||| | | Sbjct 124912632 GATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACTCTCGAGGTGGAGCCGAG 124912573 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| ||| || ||||||||||| || || || || || || Sbjct 124912572 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 124912513 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| || |||||| | || ||| |||||| | || || ||||| Sbjct 124912512 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 124912453 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || ||||| |||||| Sbjct 124912452 CATCCAGAAAGAGTCCACC 124912434 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| || || || || | || || || || |||| ||||| || || ||| Sbjct 124913088 GATGCAAATCTTCGTGAAGACACTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 124913029 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || | ||||| ||| || ||||||||||| || ||||| || || || Sbjct 124913028 TGACACTATCGAGAACGTCAAAGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCA 124912969 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || |||||||| || ||| | || ||| |||||| | || || ||||| Sbjct 124912968 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 124912909 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || ||||| || ||| Sbjct 124912908 CATCCAGAAAGAGTCTACC 124912890 >seq22 Length=145138636 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 |||||||| ||||||||||| || ||||| || || || ||||| ||| |||| |||||| Sbjct 123236918 AAAATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATACTTGCGGGCAAA 123236977 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| |||||| |||| || |||||||| || || || |||||| | || Sbjct 123236978 CAGCTGGAGGATGGCCGCACTCTCTCAGACTACAACATCCAGAAGGAGTCCACCCTGCAC 123237037 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | || |||| |||| || || Sbjct 123237038 CTGGTGCTGCGCCTGCGAGGTGG 123237060 >seq21 Length=159345973 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||| || || || || ||| Sbjct 25689961 AGATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCCCA 25689902 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| || || |||| ||||||||||||||||||| |||||| || | Sbjct 25689901 GTGACACCACTGAGAATGTCAAGGCCGAAATTCAAGACAAGGAGGGCGTTCCACTTGACC 25689842 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | ||| |||| ||||||| ||||||||| | |||||| ||| || |||| || | || Sbjct 25689841 AGCAATGTCTGATATTTGTGGGCAAACAGCTGGAGGATGGCCGTACTCTCTCAGACTGCA 25689782 Query 22397 ACATTCAAAAAGAATCCA 22414 |||| || ||||| |||| Sbjct 25689781 ACATCCAGAAAGAGTCCA 25689764 >seq14 Length=198295559 Score = 109 bits (120), Expect = 5e-19 Identities = 145/200 (73%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||| ||| || ||||| || || | || || || || |||||||||| || | | | Sbjct 27486245 AGACGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACTCTTGACGTCAAGCCAA 27486304 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || || ||||| ||||||||||||||||| ||||| ||||| || | Sbjct 27486305 GTGACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGA-GGTATCCCACCTGACC 27486363 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||| ||| |||| ||||||||| | |||||| ||| || |||| || | || Sbjct 27486364 AGCAGCATCTGATACTTGCTGGCAAACAGCTGGAGGATGGCCGAACTCTCTCAGACTGCA 27486423 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| ||||| |||||| Sbjct 27486424 ACATCTGGAAAGAGTCCACC 27486443 >seq44 Length=90338345 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||| || ||||| || || | || || | || |||| ||||| || || ||| Sbjct 48334856 AGATGTGGATCTTTGTGAAGACCCTCACAGGCCAGACCATCACCCTTGAGGTCGAGCCCA 48334797 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 ||| || || || ||||| ||||||||||||| | |||| || ||| || | Sbjct 48334796 GTGATGCCACTGAGAATGTCAAAGCCAAAATTCAAGACAGGTAGGGCATCTTACCTGACC 48334737 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || |||| ||||||| ||||||||| | ||||| || ||| ||| || |||| Sbjct 48334736 AGCAGTGTCTGATATTTGAGGGCAAACAGCTGAAGGATGGCCACACACTCTTAGACTACA 48334677 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| || ||||| |||||| Sbjct 48334676 ACATCCAGAAAGAGTCCACC 48334657 >seq51 Length=58617616 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 ||||| ||||| || || || ||||| |||||||||||||||||| | |||||| |||| Sbjct 18573661 GGTATCCCACCTGACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCCGC 18573720 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAG 22408 || |||| || |||||||| || |||| Sbjct 18573721 ACTCTCTCAGACTACAACATCCAGAAAG 18573748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725043278570