Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq44 93.3 3e-14 seq20 84.2 2e-11 seq1 82.4 5e-11 >seq44 Length=90338345 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| | ||||| || ||||| ||| | || ||| | Sbjct 61055918 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACC 61055859 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || ||| | | || | ||| || || | ||| || || | ||| | Sbjct 61055858 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGGTAAGGAAGGAATTCCTCCTGA 61055799 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || |||||||| |||||||||||||| || || |||||| | ||| || | || || Sbjct 61055798 TCAGCAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTA 61055739 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||||||| ||||| |||||||||||| | || || Sbjct 61055738 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 61055703 >seq20 Length=170805979 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| | |||| || ||||| ||| | || | ||| | Sbjct 113581497 CAAAATGCAGATTTTCTTGAAAACCCTTACGGAGAAGACCATCACCCTCGAGGCTGAACC 113581556 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | || ||| | | || | ||| || || ||||| || || | ||| | Sbjct 113581557 CTTGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 113581616 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || || ||||| ||||||||||| || ||||| |||||| | ||| || | || || Sbjct 113581617 TCAGCAAAGACTGATCTTTGCTGGAAAGCAACTGGAAGATGGATGTACTTTGTCTGACTA 113581676 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 || |||||| ||||| |||||||||||| | || || Sbjct 113581677 CAGTATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 113581712 >seq1 Length=248956422 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||||| |||||||||||||| || | |||||| | ||| || | || ||| Sbjct 192716300 CAGCAGAGACTGATCTTTGCTGGCAAGCAGTTGGAAGATGGACGTACTTTGTCTGACTAC 192716359 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 |||||||| ||||| |||||||||||| | || || Sbjct 192716360 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 192716394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358122277234612