Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq44 102 7e-17 seq1 96.9 3e-15 seq46 95.1 1e-14 seq31 89.7 4e-13 seq52 87.8 2e-12 seq20 87.8 2e-12 seq64 82.4 6e-11 >seq44 Length=90338345 Score = 102 bits (112), Expect = 7e-17 Identities = 160/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | |||||||| || | ||| | ||||| || |||||||| ||||| || Sbjct 61055688 ACCACCA-GAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 61055746 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| || || || ||||| |||| || | ||| || || ||||| Sbjct 61055747 CAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 61055806 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || | ||||| |||| | ||| | || || | || ||| || Sbjct 61055807 AATTCCTTCCTTACCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAAC 61055866 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || ||||| || ||||||||||| Sbjct 61055867 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 61055914 >seq1 Length=248956422 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | ||||| || |||||||| ||||| || Sbjct 192716410 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 192716351 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| | || || ||||| |||| || | ||| || || ||||| Sbjct 192716350 CAAAGTACGTCCATCTTCCAACTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 192716291 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | || | || || | | ||| || Sbjct 192716290 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTATCTATTGTATCCGAGAGTTCAAC 192716231 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || | || ||||| || ||||||||||| Sbjct 192716230 CTCGAGGGTGATGGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCAT 192716183 >seq46 Length=83257441 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | ||| || |||||| || || || || Sbjct 16382332 GTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 16382273 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| ||||| ||||||||||| || ||||| || Sbjct 16382272 GCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 16382213 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 16382212 ACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 16382153 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 16382152 TTCACGAAGATCTGCAT 16382136 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || || | ||| | || || ||||| || |||||||| || Sbjct 22204550 ATACCACCTCTCAGACGCAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCA 22204491 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | | | || |||||| || || || || || ||||||| | ||| ||||| || Sbjct 22204490 GAAAGACTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGG 22204431 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||||||||| || ||||| || | | ||| | |||||| ||| || Sbjct 22204430 GGGATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCC 22204371 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || ||||||||||| || || || || |||||||| Sbjct 22204370 ACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 22204321 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | |||||| |||||| || || || || Sbjct 16382104 GTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCTTCCAGCTGCTTGCCT 16382045 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || ||||||||||| || || ||||| || Sbjct 16382044 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 16381985 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| ||| || || || | ||| | || |||||||| || ||| Sbjct 16381984 ACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTT 16381925 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 16381924 TTCACGAAGATCTGCAT 16381908 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || | ||| || |||||| || || || || Sbjct 16382560 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 16382501 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || ||||||||||| || ||||| || Sbjct 16382500 GCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCTTGGATCTTGGCCTTC 16382441 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| ||| || || |||| || | || ||||||||||| || Sbjct 16382440 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTC 16382381 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 16382380 TTCACGAAGATCTGCAT 16382364 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || ||||| | ||||| ||||||||||| ||||| | Sbjct 10258989 ACCACCACGCAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGA 10258930 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| |||||| ||||| || ||||| |||| | | || || || ||||| Sbjct 10258929 CAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGG 10258870 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || |||| |||| | ||| | || || | ||| || Sbjct 10258869 AATTCCTTCCTTATCCTGGATCTCGGCCTTTACATTTTCTATCGTATCCAACGGTTCAAC 10258810 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | | ||| || || || || || ||||| || ||||||||||| Sbjct 10258809 CTTGAGGGTGGTTGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 10258762 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | ||||| |||||| || || || || Sbjct 22204744 GTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACCGCCATCTTCCAGCTGCTTGCCT 22204685 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| || || || ||| |||||||||| || ||||| || Sbjct 22204684 GCAAAGATGAGCCTCTGCTGATCGGGGGGA-TGCCTTCTTTATCTTGGATCTTGGCCTTC 22204626 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 22204625 ACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 22204566 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 22204565 TTCACGAAGATCTGCAT 22204549 >seq31 Length=133275309 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| || |||||||| || || || || |||||| || || || || Sbjct 124913347 GTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCG 124913406 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| |||||||||||||| ||||| |||||| ||| Sbjct 124913407 GCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCTTTG 124913466 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| ||||| || | ||| | || ||||| || || || Sbjct 124913467 ACGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGTGTC 124913526 Query 114366 TTTACAAAAATCTGCAT 114382 || || || || ||||| Sbjct 124913527 TTCACGAAGATTTGCAT 124913543 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| || |||||||| || || || || |||||| || || || || Sbjct 124912891 GTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCG 124912950 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| |||||||||||||| ||||| |||||| ||| Sbjct 124912951 GCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTTGCTTTG 124913010 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| ||| ||||| || | ||| | || ||||| || || || Sbjct 124913011 ACGTTCTCGATAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGTGTC 124913070 Query 114366 TTTACAAAAATCTGCAT 114382 || || || || ||||| Sbjct 124913071 TTCACGAAGATTTGCAT 124913087 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || || |||||| |||||| || ||||| || Sbjct 124913119 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGTTTTCCG 124913178 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| || || |||||||||||||| || || |||||| || Sbjct 124913179 GCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCCTTATCTTGGATCTTTGCCTTG 124913238 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || || | ||| | || || || ||||| || Sbjct 124913239 ACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTACCAGTCAGGGTC 124913298 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 124913299 TTCACGAAGATCTGCAT 124913315 >seq52 Length=64444167 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | ||||| || |||||||||||||| || Sbjct 17517070 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 17517011 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || ||| || ||||| || | ||| |||| || | | || || ||||| Sbjct 17517010 CAAAGCACATCCATCCTCCAGTTGCTTGCTAGCAAAGATCAGTCTTTACTGATCAGGAGG 17516951 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| | ||| || || |||| |||| | ||| | || || | || ||| || Sbjct 17516950 AATTCTTTCCTTATCCTGGGTCTTGGCCTTTATATTTTCTATCGTATCTGAGGGTTCAAC 17516891 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | | ||| | || || || || || ||||| |||||||||||||| Sbjct 17516890 CTTGAGGGTGATGGTCTTCCCTGTGAGGGTTTTCACAAAAATCTGCAT 17516843 >seq20 Length=170805979 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | ||||| || |||||||| |||| || Sbjct 113581728 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATACTGTAGTCAGA 113581669 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| |||||| ||||| || ||||| |||| || | || || || ||||| Sbjct 113581668 CAAAGTACATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 113581609 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || || ||| | Sbjct 113581608 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAGC 113581549 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || | || || ||||| | ||||||||||| Sbjct 113581548 CTCGAGGGTGATGGTCTTCTCCGTAAGGGTTTTCAAGAAAATCTGCAT 113581501 >seq64 Length=156040895 Score = 82.4 bits (90), Expect = 6e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 114159 CCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATA 114218 |||| ||||||| | | ||| | |||| || |||||||||||| | || || | Sbjct 3717372 CCACAAAGTCTCAGCAAAAGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAA 3717313 Query 114219 GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATG 114278 ||||| |||||| ||||| || ||||| |||| || | || || || |||||||| Sbjct 3717312 GTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATT 3717253 Query 114279 CCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCC 114338 ||||| || || ||||| |||| | ||| | | || | || ||| || || Sbjct 3717252 CCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGCATCTGAGGGTTCAACCTCA 3717193 Query 114339 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 114381 | ||| | || || || | || ||||| || |||||||||| Sbjct 3717192 AGGGTGATGGTCTTCCCCCTTAGGGTTTTCACGAAAATCTGCA 3717150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420131440415736