Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq64 170 4e-37 >seq64 Length=156040895 Score = 170 bits (188), Expect = 4e-37 Identities = 417/622 (67%), Gaps = 24/622 (4%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 |||||| |||| || |||||| ||||| |||||||| || ||| ||||||| || Sbjct 44310225 ATCGAGTACCATGATATCTGGCAGATGTATGAGAAGGCGGAGGCTTCCTTCTGGACCACC 44310166 Query 42345 GAGGAGATTGACCTGGCCAAGGACA--CGGCCGGCTGGGAGTCACTGT---CTGAGAACG 42399 |||||| | |||||| ||||||||| |||| |||||| || ||| | ||| | | Sbjct 44310165 GAGGAGGTGGACCTGTCCAAGGACATTCGGCA--CTGGGAATCCCTGAAGCCCGAGGA-G 44310109 Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 | | |||| || | | |||| ||||| || || ||| |||||| | |||| Sbjct 44310108 AGATATTTTATATCCCATG--TTCTGGTTTTCTTTGCAGCAAGTGATGGCATAATAAATG 44310051 Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTA 42517 | || ||| | || | || || ||| ||| || || ||||| ||||| Sbjct 44310050 AAAATTTGGTGGAGCGATTTAGCCAAATAGTTCAGATTACA--GAAGCCCGCTGTTTCTA 44309993 Query 42518 CGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---A 42574 |||||||| || ||||| || ||| | || ||||| |||| | || || | | Sbjct 44309992 TGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTTATTGA 44309936 Query 42575 CACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634 ||| |||||| |||||| || | | || ||||| ||||| || |||||||| Sbjct 44309935 CACTTACATCAAAGATCCCAAAGAAAGGGAATTTCTCTTCAATGCCATTGA-ACGATGCC 44309877 Query 42635 CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTT 42694 || ||||||||||||| || ||||| | |||||| | | || || || | Sbjct 44309876 TTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCTACCTA 44309817 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGC 42754 || || | | ||||||||| | || || || ||||||||||| || || | || || Sbjct 44309816 TGGTGAACGTGTTGTAGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGC 44309757 Query 42755 CTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 || || |||||||||||| | | ||||||| || ||||| || || || ||||| Sbjct 44309756 ATCGATATTCTGGCTCAAGAAACGAGGACCGATGCCTGGCCTCACGTTTTCCAATGAACT 44309697 Query 42815 CATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCT 42874 || ||||| || ||||| | || | || ||||| ||| | ||||| | ||||| Sbjct 44309696 TATTAGCAGAGAAGAGGGTTTACACTGTGATTTTGCTTGCTTGATGTTC---AAACACCT 44309640 Query 42875 CAGGCACAAGCCCTCGAAGGAG 42896 ||||| || ||| ||||| Sbjct 44309639 GGTACACAAACCATCGGAGGAG 44309618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944332377149280