Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq46 140 3e-28 seq44 116 4e-21 seq1 114 1e-20 seq11 102 8e-17 seq21 95.1 1e-14 seq64 93.3 4e-14 seq20 87.8 2e-12 >seq46 Length=83257441 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 16382560 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 16382501 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| |||||||||||| || || |||||||| ||||| || || ||| Sbjct 16382500 GCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCTTGGATCTTGGCCTTC 16382441 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | ||| | |||||||||||||| || Sbjct 16382440 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTC 16382381 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 16382380 TTCACGAAGATCTGCAT 16382364 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||||| ||||| || |||||||| || | | |||| | ||| Sbjct 22204532 AGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGACTGCGGCCATCT 22204473 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | ||||||| |||||||||||| || || |||||||| ||| Sbjct 22204472 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCT 22204413 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || |||| || |||||||| | || | |||| Sbjct 22204412 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTC 22204353 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| || || ||||| || ||||| Sbjct 22204352 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 22204321 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 16382332 GTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 16382273 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||||||||| || |||||||| || || || || ||| Sbjct 16382272 GCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 16382213 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || |||||||| | || | |||||||||||||| || Sbjct 16382212 ACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 16382153 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 16382152 TTCACGAAGATCTGCAT 16382136 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | | || || | ||||| ||||||||||| Sbjct 16382104 GTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCTTCCAGCTGCTTGCCT 16382045 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| |||||||||||| ||||| ||||| || || || || || ||| Sbjct 16382044 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 16381985 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | |||||||||||| | ||| Sbjct 16381984 ACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTT 16381925 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || |||||||| Sbjct 16381924 TTCACGAAGATCTGCATTTT 16381905 Score = 118 bits (130), Expect = 1e-21 Identities = 145/197 (74%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | | || | | ||||| ||||||||||| Sbjct 22204744 GTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACCGCCATCTTCCAGCTGCTTGCCT 22204685 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| |||||| ||||| ||| | |||||||| ||||| || || ||| Sbjct 22204684 GCAAAGATGAGCCTCTGCTGATCGGGGGGA-TGCCTTCTTTATCTTGGATCTTGGCCTTC 22204626 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || |||||||| | || | |||||||||||||| || Sbjct 22204625 ACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 22204566 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 22204565 TTCACGAAGATCTGCAT 22204549 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| ||| | ||| | ||||| || || ||||||||||| ||||| | | Sbjct 10258989 ACCACCACGCAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGA 10258930 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | ||||| || |||||||| ||| | || | | ||||| || ||||| Sbjct 10258929 CAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGG 10258870 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCA 64394 ||||||||| || || || || | ||||||| || | |||| || ||| || | Sbjct 10258869 AATTCCTTCCTTATCCTGGATCTCGGCCTTTACATTTTCTATCGTATCCAACGG-TTCAA 10258811 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | | | || ||||| || || | ||||| |||||||| |||||||| Sbjct 10258810 CCTTGAGGGTGGTTGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 10258759 >seq44 Length=90338345 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| || || || |||||||| ||||| || | | || || | Sbjct 61055699 TCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCC 61055758 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| ||||||||||| ||| | || || | |||||| || |||||||||||||| || Sbjct 61055759 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 61055818 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 | || || || ||||||| || | ||||| || || || || | || | Sbjct 61055819 ACCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGAT 61055878 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || || | ||||| |||||||| |||||||| Sbjct 61055879 GGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 61055917 >seq1 Length=248956422 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||| ||||| || | Sbjct 192716410 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 192716351 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| | ||||||||| ||| | || || | |||||| || ||||| Sbjct 192716350 CAAAGTACGTCCATCTTCCAACTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 192716291 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | |||||| | || || Sbjct 192716290 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTATCTATTGTATCCGAGAGTTCAAC 192716231 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| || | | ||||| |||||||| |||||||| Sbjct 192716230 CTCGAGGGTGATGGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCATTTT 192716180 Score = 109 bits (120), Expect = 5e-19 Identities = 145/200 (73%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||| | ||||| || |||||||| || | | || | || ||||| |||||| |||| Sbjct 217850438 GTCAACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACA-GCCTCTTCTAGCTGCATGCCT 217850496 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| |||||||||||| | || ||||| || || || || || ||| Sbjct 217850497 GCAAAGATGAGCCTCTGCTGGTCGGGGAGGATGCCTTCCTTATCCTGGATATTGGCCTTC 217850556 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || |||||||| | || | ||||||||| |||| || Sbjct 217850557 ACATTTTCGATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 217850616 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || |||||||| Sbjct 217850617 TTCACGAAGATCTGCATTTT 217850636 >seq11 Length=242193529 Score = 102 bits (112), Expect = 8e-17 Identities = 146/208 (70%), Gaps = 11/208 (5%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 136329478 GTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 136329537 Query 64307 GCATAAATGAGCCGCTGCTGGTCG-----------GGAGGAATTCCTTCTTTTTCTTGTA 64355 ||| | ||||||| |||||||||| || || | |||||||| || || | Sbjct 136329538 GCAAAGATGAGCCTCTGCTGGTCGGGGCTGGGGGTGGGGGGGTGCCTTCTTTATCCTGGA 136329597 Query 64356 TTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGC 64415 | || ||| ||| |||| || |||| || |||||||| | || | |||||||| Sbjct 136329598 TCTTGGCCTTCACATTTTCCATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGC 136329657 Query 64416 CGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | |||| || || ||||| || ||||| Sbjct 136329658 CAGTCAGGGTCTTCACGAAGATCTGCAT 136329685 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64250 GATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCA 64309 || ||||| ||||||||||| || || |||| | ||||| | ||||||||| || Sbjct 148863608 GACTCTTTCTGAATGTTGTAGTCACAAACAGTGCAGCCATCTTCTAACTGCTTGCCTACA 148863667 Query 64310 TAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACA 64369 | ||||| | |||||||| || || || || ||||| | || || || ||| ||| Sbjct 148863668 AAGATGAGACTGTGCTGGTCAGGGGGGATGCCCTCTTTAACATGGATCTTGGCCTTCACA 148863727 Query 64370 ACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTT 64429 | | | |||| | ||||| || | || | |||||||||||||| ||||| Sbjct 148863728 TTTTGGAGGATGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTC 148863787 Query 64430 ACGAAAATTTGCATTTT 64446 | ||| ||||||||||| Sbjct 148863788 AGGAAGATTTGCATTTT 148863804 >seq21 Length=159345973 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || |||||||||||||| || | Sbjct 157192593 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAAGCTCCTTTTGAATGTTGTAGTCAG- 157192535 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || | | ||||| || |||||||| ||| | || || | ||||| || ||||| Sbjct 157192534 -ACAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 157192476 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | |||| || || || Sbjct 157192475 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCAAGGGTTCAAC 157192416 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | | || | |||||| || || | ||||||| | |||| |||||||| Sbjct 157192415 CTTGAGGGTGATGGTCTTCCCCGTAAGGGTTTTTATGGAAATCTGCATTTT 157192365 >seq64 Length=156040895 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| |||| ||||||| || | || |||||||||||| | || | | || || | Sbjct 3717364 TCTCAGCAAAAGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCC 3717305 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || |||||||| ||| | || || | ||||| || |||||||||||||| || Sbjct 3717304 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 3717245 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || ||||||| || | | ||| || || || || | || | Sbjct 3717244 ATCCTGGATCTTGGCCTTTACATTTTCTATCGCATCTGAGGGTTCAACCTCAAGGGTGAT 3717185 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || | | ||||| |||||||| |||| ||| Sbjct 3717184 GGTCTTCCCCCTTAGGGTTTTCACGAAAATCTGCAGTTT 3717146 >seq20 Length=170805979 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||| |||| || | Sbjct 113581728 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATACTGTAGTCAGA 113581669 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | ||||| || ||||| || ||| | || || | ||||| || ||||| Sbjct 113581668 CAAAGTACATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 113581609 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | ||||| || || | Sbjct 113581608 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAGC 113581549 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| | || | ||||| | |||||| |||||||| Sbjct 113581548 CTCGAGGGTGATGGTCTTCTCCGTAAGGGTTTTCAAGAAAATCTGCATTTT 113581498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499641190066320