Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq31 109 5e-19 seq44 105 6e-18 seq1 104 2e-17 seq46 91.5 1e-13 seq33 86.0 6e-12 seq20 86.0 6e-12 >seq31 Length=133275309 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | || |||||||| || || ||||| || || ||||| ||| || Sbjct 124913562 CACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTC 124913621 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 |||||||||||||| |||||| | |||||| || ||||| ||||| ||||| || Sbjct 124913622 CAGCTGTTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTG 124913681 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||||| | |||| |||||| | ||| || |||| ||| | || || Sbjct 124913682 GATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTT 124913741 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||||||| || || || |||||||| Sbjct 124913742 ACCAGTCAGAGTCTTCACGAAGATCTGCAT 124913771 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| || || || ||| ||| || ||||||||||| Sbjct 124913119 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGTTTTCCG 124913178 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | ||||||||| ||||| ||||| ||||| || ||| || |||| Sbjct 124913179 GCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCCTTATCTTGGATCTTTGCCTTG 124913238 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || |||| ||| | || || || ||||| || Sbjct 124913239 ACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTACCAGTCAGGGTC 124913298 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 124913299 TTCACGAAGATCTGCAT 124913315 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | ||||||||||| || || ||||| || || ||||| ||| || Sbjct 124913334 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTC 124913393 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| ||||| || ||||||| | |||||| || ||||| ||||| ||||||||| Sbjct 124913394 CAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 124913453 Query 127024 GATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 ||| || ||| |||| | |||| |||||| | |||||| || | ||| | || | Sbjct 124913454 GATCTT-TGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCT 124913512 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || || || || || || || ||||| Sbjct 124913513 TGCCAGTGAGTGTCTTCACGAAGATTTGCAT 124913543 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | || |||||||| || || ||||| || || || ||| ||| || Sbjct 124912650 CACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTC 124912709 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||||||||| || ||||||| | |||||| || ||||| ||||| |||||||| Sbjct 124912710 CAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTG 124912769 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||||| | || | |||||| | ||| ||||||| || | || || Sbjct 124912770 GATCTTTGCCTTGACATTCTCAATGGTGTCACTCGGCTCCACTTCGAGAGTGATGGTCTT 124912829 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || || || || |||||||| Sbjct 124912830 ACCAGTCAGGGTCTTCACGAAGATCTGCAT 124912859 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | ||||||||||| || || ||||| || || ||||| ||| || Sbjct 124912878 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTC 124912937 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| ||||| || ||||||| | |||||| || ||||| ||||| |||||||| Sbjct 124912938 CAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTG 124912997 Query 127024 GATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 ||| || ||| |||| | |||| ||||| | |||||| || | ||| | || | Sbjct 124912998 GATCTT-TGCTTTGACGTTCTCGATAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCT 124913056 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || || || || || || || ||||| Sbjct 124913057 TGCCAGTGAGTGTCTTCACGAAGATTTGCAT 124913087 >seq44 Length=90338345 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126898 TCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGA 126957 || |||||| | ||| | |||||||| |||||||||||||| || || || || Sbjct 61055699 TCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCC 61055758 Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || ||||| |||||| || ||||||||| ||||| || || ||||| Sbjct 61055759 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 61055818 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 || ||| || ||| | | ||| | || |||| || || |||| ||| | Sbjct 61055819 ACCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGAT 61055878 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || ||||| || ||||||||||| Sbjct 61055879 GGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 61055914 >seq1 Length=248956422 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | |||||||| |||||||||||||| || Sbjct 192716412 GCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCA 192716353 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || | ||| || ||||| |||||| || ||||||||| ||| Sbjct 192716352 GACAAAGTACGTCCATCTTCCAACTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGA 192716293 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | || | || |||| || Sbjct 192716292 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTATCTATTGTATCCGAGAGTTCA 192716233 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || | || ||||| || ||||||||||| Sbjct 192716232 ACCTCGAGGGTGATGGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCAT 192716183 >seq46 Length=83257441 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || | ||||| | Sbjct 16382350 CGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 16382291 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||| |||||||| ||||| || || Sbjct 16382290 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTA 16382231 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | ||||| |||||| | ||| ||||| | ||| | Sbjct 16382230 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 16382171 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| || || || || |||||||| Sbjct 16382170 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 16382136 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/242 (68%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 126874 TTACTATACT--GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGA 126931 || || |||| || ||||| || | || |||||| ||||| | ||||||||||||||| Sbjct 10259003 TTCCTTTACTTAGCACCACCACGCAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGA 10258944 Query 126932 ATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGC 126991 |||||||| | || || | ||| || || || || ||||| ||||| || Sbjct 10258943 ATATTGTAGCCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTT 10258884 Query 126992 TGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTG 127051 |||||||| ||||| || || ||||| ||| ||| | ||| | | ||| | || Sbjct 10258883 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTCGGCCTTTACATTTTCTATCGTA 10258824 Query 127052 TCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 127111 ||| || || | || ||| || || || || || ||||| || ||||||||| Sbjct 10258823 TCCAACGGTTCAACCTTGAGGGTGGTTGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 10258764 Query 127112 AT 127113 || Sbjct 10258763 AT 10258762 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| ||| | || |||||||| || || ||||| || | |||| | Sbjct 22204535 CGCAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGACTGCGGCCA 22204476 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||| ||||| || ||||| || || Sbjct 22204475 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTA 22204416 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || ||| | | ||||| |||||| | ||| ||||| | ||| | Sbjct 22204415 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 22204356 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| || || || || |||||||| Sbjct 22204355 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 22204321 >seq33 Length=107043718 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| | || || |||||||| || || ||||| | Sbjct 58141506 CCACCTCGCAGGCGCAGCACCAGGTTTAGGGTGGACTCTTTCTGGATGTTGTAGCCTGAG 58141447 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| | ||| || ||| |||| ||||| | |||| |||||||| || || || Sbjct 58141446 AGAGTGTGGCCATCCTCCAGCCGTTTCCCAGCAAATATCAGACGCTGCTGGTCAGGTGGG 58141387 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||||| |||| | | | |||||| || || ||| Sbjct 58141386 ATACCCTCCTTGTCCTGAATTTTGGTTTTGACATTCTAAATGGTGTCGGTGGGCTTGACC 58141327 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| || || || || ||||| |||||||| Sbjct 58141326 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 58141280 >seq20 Length=170805979 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || |||||| | ||| | |||||||| ||||||||| |||| || | Sbjct 113581727 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATACTGTAGTCAGAC 113581668 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || || || |||||||| |||||| || |||||||| ||||| Sbjct 113581667 AAAGTACATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 113581608 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| ||| ||| || ||| | | ||| | || ||| || | Sbjct 113581607 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAGCC 113581548 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || || | || || ||||| | ||||||||||| Sbjct 113581547 TCGAGGGTGATGGTCTTCTCCGTAAGGGTTTTCAAGAAAATCTGCAT 113581501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497364506720