Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq31 82.4 7e-11 >seq31 Length=133275309 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || ||||| || || || || ||||| || || || | ||| ||| || Sbjct 124912878 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTC 124912937 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || ||||| || | ||||| | |||||||| || ||||||||||| || ||||| Sbjct 124912938 CAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTG 124912997 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || ||| ||||| || | || | ||||| | |||||| || || || | || | Sbjct 124912998 GATCTTTGCTTTGA-CGTTCTCGATAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCT 124913056 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||| || || || || || || ||||||||| Sbjct 124913057 TGCCAGTGAGTGTCTTCACGAAGATTTGCATC 124913088 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || ||||| || || || || ||||| || || || | ||| ||| || Sbjct 124913334 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTC 124913393 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || ||||| || | ||||| | |||||||| || ||||||||||| || || || Sbjct 124913394 CAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 124913453 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || ||| ||||| || | || | |||||| | |||||| || || || | || | Sbjct 124913454 GATCTTTGCTTTGA-CGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCT 124913512 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||| || || || || || || ||||||||| Sbjct 124913513 TGCCAGTGAGTGTCTTCACGAAGATTTGCATC 124913544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451999934276880