Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1 179 5e-40 seq23 122 1e-22 >seq1 Length=248956422 Score = 179 bits (198), Expect = 5e-40 Identities = 174/224 (78%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || ||||||||||| ||||||||||| || || || ||||| || |||||||| || Sbjct 186676487 GTCTGGAACAACTGCTCATCACCCCATTCAGGATGCTCCTGTTTAAGCACATCGCATACT 186676546 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||||||||| | |||||| || ||||| |||||||| | ||| ||||| | |||||| Sbjct 186676547 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 186676606 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | |||||| ||||| || |||| || || |||| || | || | ||| | Sbjct 186676607 ACCTCCTGCCCCACAGCAAACCGTAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 186676666 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 |||| || |||||||| ||||| |||||||| || || ||||| Sbjct 186676667 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAAT 186676710 Score = 167 bits (184), Expect = 3e-36 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| |||||||| || || ||||| |||||||| | || || || | ||| Sbjct 186674480 AAGGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATT 186674539 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | ||||| || || || || || ||||| || |||||||| || || || || || || Sbjct 186674540 TGAAAACCCACTTCTCCACCAAAAGTGCTTGGCTTCCAGTAGGCAGGAGAACATATAACA 186674599 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || | || | ||| | ||||| ||| Sbjct 186674600 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAACTTCTACCATGGTTTCACCAAAG 186674659 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 |||||| | || || || ||||| || | | | ||| || || || ||||| |||| | Sbjct 186674660 ATGGCATCTGGCCGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCACAGCATCGATG 186674719 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || |||||||| ||||||||||| |||| || ||||| || ||| Sbjct 186674720 TCACCATAGAGTGCTTCCAACTCTGCAGACATTTCCTTTTCTCCT 186674764 Score = 109 bits (120), Expect = 8e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 |||||||| || || | ||||| ||||| ||| ||| || ||||| || | ||| ||| Sbjct 186678257 TCACCTTTGACACCCAAGGGAGTCGGGCAATCATCAGGCACAGGAGGAAGGGCTCTAGTA 186678316 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || || || || ||||||||||| ||||||||||| || ||||| Sbjct 186678317 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAGCATTGTAAGTT 186678376 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||||||||||| | || |||||| Sbjct 186678377 GGTGGACTGTCAATCAAATGTGATCTGGCT 186678406 Score = 107 bits (118), Expect = 3e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| || | |||||||| || |||||| ||| ||| | || Sbjct 186677643 TCTTACCCCATGGCCCAGCCCGTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 186677702 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || ||||||| ||| | |||||||||||| Sbjct 186677703 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGAGCCCTGGGGATC 186677762 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAGACG 10300 ||||| || | || | | || | ||| |||||||||| ||||||| || || | Sbjct 186677763 AGGGATGAACTTTCTTCTTAGAAGCAATTTTTCCACAATCTCATTTGAATCAGGAAGCTG 186677822 Query 10301 CGCCTTACCTGA 10312 | |||||||| Sbjct 186677823 CTTTTTACCTGA 186677834 Score = 104 bits (114), Expect = 3e-17 Identities = 113/148 (76%), Gaps = 3/148 (2%) Strand=Plus/Plus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || || |||| |||| || || ||||| |||||||||||| ||| | Sbjct 186679317 CTTACGTGTTGAGCAGTTTTCTCCATAGAATCCTGTCCGGGTACAATCGCACTTATACTG 186679376 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||||| ||||| |||| ||||| ||||| || || || ||||| ||||||||||| || Sbjct 186679377 GTCAAATCCCACACTCATACATACACCTCGGTTTTGACATGGGTGGGAACAGCAAGGATT 186679436 Query 10960 GGCTGCAATTTAAAAGATAG--AATAAA 10985 ||||||| ||||| || || |||||| Sbjct 186679437 TGCTGCAA-TTAAAGGACAGCAAATAAA 186679463 >seq23 Length=138394717 Score = 122 bits (134), Expect = 1e-22 Identities = 178/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || |||| || || || || ||||| || ||||| || ||||||||| Sbjct 122392429 GTGGCCGTCTTGACAATGTTAAAGCCCACCTCGCCGCCAAATGTGCTCGGCTTCCAGTAC 122392370 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 |||| || |||||| ||| | | ||| || || | |||||| |||||||| | ||| Sbjct 122392369 TCCGGAGAACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCT 122392310 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTA 9111 || || ||||| || ||||| | ||| | ||||| | || | || |||| ||| Sbjct 122392309 ATCATACTCTCCCCAAAGATAGAGTTTGGATGGCACTTTTCAA-GAAGCAGTCCAGGGTA 122392251 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || || | ||| ||||| | | |||||||| || || ||||||||||| Sbjct 122392250 GAACTCCAACGCATCAATGTCTCCATACAATTCCTCCAACTCTGCTGCCATCTCCTTCTC 122392191 Query 9172 ACCTACAAG 9180 |||||||| Sbjct 122392190 TCCTACAAG 122392182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723722771065200