Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq16 96.9 4e-15 >seq16 Length=190214555 Score = 96.9 bits (106), Expect = 4e-15 Identities = 164/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 159547 ATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGT 159606 || ||||||||||| ||||| || |||| || |||||| |||||||| | | ||| Sbjct 56594740 ATCATGATTACATACCCATCCACCAATGGGGTGTTTGAAGAGAACATCAGTGACGTGTGT 56594799 Query 159607 AAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAG 159666 | | | ||| | |||| || |||| || || || || |||||| | || || ||| Sbjct 56594800 GACCTCATCCATCAACATGGAGGATAGGTCTACCTAGACGGGGCAAATATGAACGCTCAG 56594859 Query 159667 GTAGG--TCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATA 159724 || || ||| | || | |||| ||| | ||||| | || ||||| | || | Sbjct 56594860 GTGGGAATCTGTC--GCCCTGGAGACTTTGGGTCTGATGTCTCGCACCTAAATCTTCACA 56594917 Query 159725 AGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTA 159780 |||| ||||| ||||| || |||| || ||||||||| | || || ||||| ||| Sbjct 56594918 AGACCTTCTGCATTCCCCACAGAGGAGGTGGTCCTGGCATGGGGCCCATTGGCGTA 56594973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588046951330080