Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_016447.1 Length=219474 Score E Sequences producing significant alignments: (Bits) Value seq1 125 1e-23 >seq1 Length=248956422 Score = 125 bits (138), Expect = 1e-23 Identities = 195/277 (70%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 197371 GGATCCGTGGGAGGTTTCGCCAGTTTTCCGCTAAATATCTCAAACGCGACAGATATTGAG 197430 |||||| ||| |||| || | | | || ||||| |||||| | ||||| |||||| Sbjct 160799798 GGATCCTAGGG-GGTTCCGTGACTCTCCCCCTAAACATCTCAGTAGACACAGAGATTGAG 160799856 Query 197431 AACGTGGCTTGGAACGGCCCTAAAATCGCTTTAGCATTTGCCAATCCTAAAG---ACGTT 197487 ||||| |||| || || |||| ||| | || || || ||| |||| | || Sbjct 160799857 AACGTCATCTGGATTGGTCCCAAAAATGCTCTTGCTTTCGCACGTCCCAAAGAAAATGTA 160799916 Query 197488 ACCATAATGGATAAAAGCTACCAGGGTCGTGTCAACATTAGCCAAACCAACTACTCTTTG 197547 ||||| |||| |||||||||| ||| || | |||| | | | | ||||| || Sbjct 160799917 ACCATTATGGTCAAAAGCTACCTGGGCCGACTAGACATCACCAAGTGGAGTTACTCCCTG 160799976 Query 197548 TGCATTAGGAACCTGACCGTGAATGATGCTGGTTCGTATAAGGCCCAAATTAACAAAAAT 197607 ||||| || || ||||| |||||||||| || || || || ||||| || ||| ||| Sbjct 160799977 TGCATCAGCAATCTGACTCTGAATGATGCAGGATCCTACAAAGCCCAGATAAACCAAAGG 160800036 Query 197608 AATTCCCAAGTCACCACCAAGGAGGAATTTACTCTGT 197644 |||| |||||||||| |||||||||| || |||| Sbjct 160800037 AATTTTGAAGTCACCACTGAGGAGGAATTCACCCTGT 160800073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 702183726685920