Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq64 251 8e-62 seq1 150 2e-31 seq11 111 2e-19 seq22 107 2e-18 >seq64 Length=156040895 Score = 251 bits (278), Expect = 8e-62 Identities = 518/762 (68%), Gaps = 14/762 (2%) Strand=Plus/Plus Query 36876 ACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGT 36935 |||||||| | ||||| || || |||| || || || || || ||||||| ||| Sbjct 44309363 ACTCCCATCCTCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGT 44309417 Query 36936 GATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACATGATA 36993 || ||||| ||| |||| |||||||| | | || | | | | ||| | | Sbjct 44309418 GAAATATTCTCCGTAAAGTCAAATGGGCTC--TCTACTCCGAAAACCTTGCTAAAACCCA 44309475 Query 36994 ATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTA 37053 |||| || ||| || || || ||||| || ||||||| |||||| | || | Sbjct 44309476 GTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCA 44309535 Query 37054 TACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCAT 37113 | ||||| || || || || | || || || ||| || |||||| ||||||| Sbjct 44309536 TCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCAT 44309595 Query 37114 CTTTAACTATAT-TAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAAT 37172 ||| ||| | | || | || || | | ||| | | | | ||| |||| Sbjct 44309596 TGATAATTATTTCTCTCACTTTCTCCTCC-GATGGTTTGTGTACCAGGTGTTTGAACATC 44309654 Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || || ||||||||||| |||||||| || ||||| || || | |||||| ||||| || Sbjct 44309655 AAGCAAGCAAAATCACAGTGTAAACCCTCTTCTCTGCTAATAAGTTCATTGGAAAACGTG 44309714 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAG 37292 | || ||||| |||| ||| || | ||| ||||| | ||||||||| ||||||||| Sbjct 44309715 AGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAG 44309774 Query 37293 AAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCA 37352 || || ||||| ||||| ||||| ||||||| |||| ||| | || | | || Sbjct 44309775 AAGATGCCTTCTACTGCAGCAAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCC 44309834 Query 37353 GAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCT 37412 |||||| | |||||||||||| || ||||| || | |||||| || Sbjct 44309835 CCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCG-TTCAATGGCA 44309893 Query 37413 TTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATAC 37472 || |||||||| | |||||| |||| | || ||||| ||||| || | ||||||| Sbjct 44309894 TTGAAGAGAAATTCCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATAC 44309953 Query 37473 ATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGAT 37532 |||||||| || || ||||| || || || || || ||||| ||||| | ||||| | | Sbjct 44309954 ATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTG-T 44310012 Query 37533 AAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGC 37591 ||| ||||| | ||| | || | || |||||||| | ||| |||||||| || Sbjct 44310013 AATCTGAACTATTTGGCTAAATCGCTCCACCAAATTTTCATTTATTATGCCATCACTTGC 44310072 Query 37592 TGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 |||||||||| | ||||||| |||||||| ||| || || Sbjct 44310073 TGCAAAGAAAACCAGAACATGGGATATAAAATATCTCTCCTC 44310114 Score = 154 bits (170), Expect = 2e-32 Identities = 315/460 (68%), Gaps = 11/460 (2%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| | ||| |||||||| ||||| || || || | |||||| ||||| || | Sbjct 144309692 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144309633 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||| | ||| ||| || | ||| ||||| ||||||||| ||||||||||| Sbjct 144309632 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 144309573 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAG--ACGTGTACCGAAAGTTGAAC---TATAAT 37350 | | ||| || ||||| ||| || | || || | | | ||| | | | Sbjct 144309572 GTGCTTTCCACCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTTGTT 144309513 Query 37351 CAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTG 37410 | || |||| |||| ||||||| || ||||| || | |||||||| | Sbjct 144309512 CCCAA-TCCAACACAAGACCCAACCTGCCTTCTTCTTGACACAGGCA-TCGTTTCAATGG 144309455 Query 37411 CTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTAT 37470 | | |||||||| | |||||| ||||| | |||| || ||||| || | | ||| Sbjct 144309454 CACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAATAT--GTGTCAATAAGGAGATTAT 144309397 Query 37471 ACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAG 37530 |||||||| || || ||||| ||||| || || || ||||| || || | ||| | Sbjct 144309396 TTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTG 144309337 Query 37531 ATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTA 37589 |||| ||||| || | || ||| | | |||||||||| | ||||||||||| Sbjct 144309336 -TAATCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACAT 144309278 Query 37590 GCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTT 37629 |||||||||||||| |||| || |||||||| ||||| Sbjct 144309277 GCTGCAAAGAAAGCCAGAATATGGGATATAAAATATCTTT 144309238 >seq1 Length=248956422 Score = 150 bits (166), Expect = 2e-31 Identities = 238/337 (71%), Gaps = 8/337 (2%) Strand=Plus/Plus Query 37288 AAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTAT 37347 ||||||| ||| |||| ||||| ||||| ||||||| || | ||| | || | | Sbjct 161378705 AAAAGAAGATATCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCTCTT 161378764 Query 37348 AATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAA 37407 || ||| || | | ||||| |||||| || ||||| | |||||||| Sbjct 161378765 TGTCCCCAATACAACTCAAGGCCCAATTTGCCTTC---TTGACACA---AGGTGTTTCAA 161378818 Query 37408 TTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAAC 37467 | | || |||||||| | |||||| |||| |||| ||||| ||||| || | || Sbjct 161378819 TGGTGTTGAAGAGAAATTCCCTTTCTTTGGCATCTTTTATGTAAGTGTCAATAAGGAGAC 161378878 Query 37468 TATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTT 37527 ||||||||||||| || | ||||| || || || || || |||| ||||| | |||| Sbjct 161378879 TATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTT 161378938 Query 37528 CAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCA 37586 | | |||| ||||| || | ||| | || | ||||||||||| ||||| |||||| Sbjct 161378939 CTG-TAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCA 161378997 Query 37587 CTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAAT 37623 || |||||||||||||| |||||| |||||||| Sbjct 161378998 CTTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 161379034 >seq11 Length=242193529 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||||||||| || | || ||||| | |||| ||| || Sbjct 10127219 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10127160 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | |||||||| || ||||||||||| ||||| ||||| ||||| ||| Sbjct 10127159 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 10127100 Query 37320 ACAAGACGT 37328 |||| |||| Sbjct 10127099 ACAACACGT 10127091 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 10129341 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 10129283 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| |||||||| || Sbjct 10129282 CCAGTGAAATATTCTCCATAAAGTCAAATGGGTT 10129249 >seq22 Length=145138636 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||||||||| | |||||| || | Sbjct 102218813 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 102218872 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || ||||||| ||||| || || ||||| | Sbjct 102218873 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 102218932 Query 37318 CTAC 37321 | || Sbjct 102218933 CCAC 102218936 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 36823 TTTTTTAAAAATCTTCATCTAACGTAAATT--TTATTTCCTTATTACTATTCATAACTCC 36880 |||||||||||||| |||| || || || |||| | | || || ||||||| | Sbjct 102208129 TTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTG-TGGTTTCTGC-CATAACTGC 102208186 Query 36881 CATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATAT 36940 | ||||| ||| ||||||| | || || |||||||| |||||||||| || || Sbjct 102208187 AAAACGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAAT 102208246 Query 36941 ATTTTCCATAAAATCAAATGGATT 36964 ||||||||||||||||| ||||| Sbjct 102208247 GTTTTCCATAAAATCAAAAGGATT 102208270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592312520511120