Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq50 134 1e-26 seq14 118 9e-22 seq11 86.0 5e-12 >seq50 Length=80373285 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 670863 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 670804 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || ||||| |||||||| ||||| |||||||| ||||| || || ||||| | || | Sbjct 670803 ACACCGAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 670744 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || || ||||| || | || ||||| ||||| || ||||| || Sbjct 670743 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAG 670700 Score = 118 bits (130), Expect = 9e-22 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| ||||| || ||||||||||||||||| || || || || |||| ||| Sbjct 662313 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 662254 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || ||||| ||| ||| ||| ||||||||||||||| ||| || ||||| || Sbjct 662253 CCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATC 662194 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAccc 30317 |||||| || || ||||| || |||||||| | |||||||| || Sbjct 662193 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC 662146 Score = 118 bits (130), Expect = 9e-22 Identities = 185/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| |||| || || || | | Sbjct 26171023 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 26171082 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| ||||| ||||||| ||||||| || Sbjct 26171083 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCTTACCCATAATCACCAGATT 26171142 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 ||| || ||| |||||||| || | |||| | ||| | || | | | || || || | Sbjct 26171143 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATTCC 26171201 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317 || || |||| ||||| || ||||| || |||||||||||| ||||| || Sbjct 26171202 TGAG------CGGTGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-GAC 26171254 Query 112318 ACGGCCACGATACCGTTCAG 112337 || || ||||| | ||| || Sbjct 26171255 ACAGCGACGATGCAGTTTAG 26171274 >seq14 Length=198295559 Score = 118 bits (130), Expect = 9e-22 Identities = 185/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| |||| || || || || | Sbjct 94061248 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 94061307 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 94061308 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATT 94061367 Query 112200 CTGCTT-GCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 112257 ||| || ||||| |||||||| || | |||| | ||| | || | | || || || Sbjct 94061368 CTGTTTACCCTCT-ACTGAAGAAGTTGTGGTC-ATTCTCTGGAAATACCTGAATTCATTC 94061425 Query 112258 CAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACAC 112317 | || || ||| ||||| || ||||| || ||||||||||||| | | || Sbjct 94061426 CTGAG------CGGCGGCCTGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTTTGGGAC 94061479 Query 112318 ACGGCCACGATACCGTTCAG 112337 || || ||||| | ||| || Sbjct 94061480 ACAGCGACGATGCAGTTTAG 94061499 >seq11 Length=242193529 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/208 (70%), Gaps = 9/208 (4%) Strand=Plus/Minus Query 112108 TCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 112167 ||||| ||||| |||| || || || | | | ||||| |||||| || || |||||| Sbjct 82857064 TCCCTCCTGAGAACTAAATTAATTCTATTCTTTAAAGGTCGATTCTTCTCAGGAATGGAG 82857005 Query 112168 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTGACTGAAGACGTAGCG 112227 ||||| |||| |||||||| ||||||| ||||| || ||| ||||| || || | | Sbjct 82857004 AACCAGATCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTACTGAGGAGGTTGTG 82856945 Query 112228 GTCAAGGCTC-GAAAGTGTTTAAAATCTTTGCAAAGTCTCGCAGGATGCCACGGCAGATC 112286 ||| | ||| | || | | || || || | || || |||| ||||| || Sbjct 82856944 GTC-ACTCTCTGGAAATACCTGAATTCATTCCTGAG------CGGTGGCCAGGGCAGGTC 82856892 Query 112287 TCCGTTGTTCCCGATGCCCATG-TCTGG 112313 |||| || |||||||||||| ||||| Sbjct 82856891 CTCGTTCTTGCCGATGCCCATGTTCTGG 82856864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408614721544394