Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq51 105 2e-18 >seq51 Length=58617616 Score = 105 bits (116), Expect = 2e-18 Identities = 191/274 (70%), Gaps = 13/274 (5%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | |||||||||||| ||| ||||||| ||||| || || || || || | Sbjct 52451668 TTCCTTCTGGATGTTATGG-AGAGTAGCTCCAAGGTCTGGCTTGGCTGCAAAACACTTTG 52451726 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 ||||||| || |||||| | | ||| ||| | ||| || || ||||||||||| | | Sbjct 52451727 TTGATGTAGGAGCTGGTATCACAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTCT 52451786 Query 1078 TTAATTTTAGC-GATAAGCGTTT----TCATATTTCAAGAGGTGATAGGATTGCTCAGTT 1132 |||||||| || | || |||| ||| | || ||||||| | ||||| ||| | Sbjct 52451787 TTAATTTTTGCAAAGAAAAGTTTGAAGTCAAA----AAAAGGTGATCGAATTGCACAGCT 52451842 Query 1133 AATTTGTGAAAAGGCTGTTTT--TCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCG 1190 ||||||| || || | |||| |||| || || ||| | | || || || | Sbjct 52451843 CATTTGTG-AACGGATTTTTTAATCCAGAAATAGAAGAAGTTCAAGCTTTGGATGACACC 52451901 Query 1191 GAAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 ||||||| || | ||| ||||| |||||||||| Sbjct 52451902 AAAAGGGGATCAGGAGGTTTTGGCTCTACCGGAA 52451935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138680648124168