Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq64 138 2e-27 seq11 84.2 4e-11 >seq64 Length=156040895 Score = 138 bits (152), Expect = 2e-27 Identities = 408/614 (66%), Gaps = 30/614 (5%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||||||| ||||||| | || ||||||| |||| ||| | || Sbjct 44310213 GATATCTGGCAGATGTATGAGAAGGCGGAGGCTTCCTTCTGGACCACCGAGGAGGTGGAC 44310154 Query 25534 CTGGCCAAGGACATGGACGGC--TGGTACGCTCT--ATCCAAAGACGAGCAGCATTTTCT 25589 ||| |||||||||| |||| ||| | | || | || || ||| ||||| | Sbjct 44310153 CTGTCCAAGGACATT--CGGCACTGGGAATCCCTGAAGCCCGAGGAGAGAT--ATTTTAT 44310098 Query 25590 CAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA 25649 | || ||| ||||||||||| |||||| ||| | || || ||| || || Sbjct 44310097 ATCCCATGTTCTGGTTTTCTTTGCAGCAAGTGATGGCATAATAAATGAAAATTTGGTGGA 44310038 Query 25650 GAGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATG 25707 | |||| | | ||| ||| ||| || ||| |||||||| || ||||| || Sbjct 44310037 GCGATTTAGCCAAATAGTTCAGATTACA--GAAGCCCGCTGTTTCTATGGCTTCCAAATT 44309980 Query 25708 GCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACA 25764 ||||| ||||| | || ||||| ||||| | || || || || ||||| | | Sbjct 44309979 GCCATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTTATTGACACTTACATCAAA 44309923 Query 25765 GACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG 25824 || | || || || || || |||||| || | || || | |||||| | Sbjct 44309922 GATCCCAAAGAAAGGGAATTTCTCTTCAATGCCATTGAACG-ATGCCTTGTGTCAAGAAG 44309864 Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAGCGG 25881 ||||| |||||| || ||||| ||| |||| ||||| | ||| || || Sbjct 44309863 AAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAA--AGAG-GCTACCTATGGTGAACGT 44309807 Query 25882 CTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTC 25941 | |||||||||||||| || || |||||||| || ||||| ||||| | || ||| Sbjct 44309806 GTTGTAGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTC 44309747 Query 25942 TGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAG 26000 ||||||||| | | | ||||| ||||| || || |||||||| || || || ||||| Sbjct 44309746 TGGCTCAAG-AAACGAGGACCGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAG 44309688 Query 26001 GGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA 26060 || |||||| | ||| | |||||||| ||| || | | || ||| || | ||||| Sbjct 44309687 AGAAGAGGGTTTACACTGTGATTTTGCTTGCTTGATGTTCA---AACACCTGGTACACAA 44309631 Query 26061 ACCTTCTCAAGAGA 26074 ||| || | |||| Sbjct 44309630 ACCATCGGAGGAGA 44309617 >seq11 Length=242193529 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 |||||||||||||| ||||| ||||| || || |||||| |||||| | || |||||| Sbjct 10127098 GTAGCCTTTGCTGCAGTGGAAGGCATTTTCTTTTCCGGTTCTTTTGCGTCGATATTCTGG 10127157 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 |||||| | | | |||| ||||| || || ||||| || || || || ||||| || Sbjct 10127158 CTCAAG-AAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGA 10127216 Query 26004 CGAGG 26008 |||| Sbjct 10127217 TGAGG 10127221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928838089096320