Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq23 313 3e-80 seq14 165 9e-36 seq52 100 3e-16 seq42 84.2 3e-11 seq18 84.2 3e-11 >seq23 Length=138394717 Score = 313 bits (346), Expect = 3e-80 Identities = 672/995 (68%), Gaps = 17/995 (2%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||||| || ||| || |||| ||| |||| ||| || | |||||| || |||| || | Sbjct 76503642 TGTGTCTCAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAACT 76503583 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || |||| ||||| || | || ||||||| || ||| || | ||||| | Sbjct 76503582 TATTGGCAAACAAGTGGTGT---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCGAAAA 76503526 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 ||| || || || | || || || | ||| |||||||| |||| || || | || | Sbjct 76503525 TGCACACTGAGCGCACATGGACTCCATCGCAGGGCGGGTAGGGAGCACCCTTGGAAACAT 76503466 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 |||| || ||||||||||||| ||||||||||| | || |||||||| || || | Sbjct 76503465 CACCCTCAAAGTACTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAGATCAT 76503406 Query 160285 ATTTGTACAT--CAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCA 160342 | || | | ||||| || |||||| | | || || | || | ||||||||| Sbjct 76503405 ACTTATGGCTGGCAGGGAGTGAGC-CCGGGA-CTTCAGGAATCCTTTGGATGGTGGCCCA 76503348 Query 160343 CAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCT 160402 || | || || |||||||| ||||| | | ||| ||||| |||| | |||| Sbjct 76503347 GAGATACTCATCAGGGCTGTATGTGTCTTGTGCCCACTCCATCAACTTTTGGATTTTTTC 76503288 Query 160403 GTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAA 160462 | | | || || | || || || | || || ||||| || ||||| || || Sbjct 76503287 ATTCTGTAGTACATACCCCACATACTCCCTACTGACCACGAAGTAGGCACTGCCAGAAAA 76503228 Query 160463 TATCGGTAT---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCC 160519 | ||| | | || ||| || | |||| | || ||||| | || | ||| Sbjct 76503227 GAGAGGTGTTTCGAGTGGAGGAAGCAT---TTTGACAGTCCCTGTGTTTGTCAGCTTTCC 76503171 Query 160520 TTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGT 160579 || || | | | | |||||||||||||| | || || | |||||| | ||||| Sbjct 76503170 ATTAACGACCTCATACCGCTTCTTCCACCTTTCTTCTTTATGGGATGGCATCCTCTCCGT 76503111 Query 160580 CTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTT 160639 || || |||| | || | | | || |||| | |||| || |||||||| || || Sbjct 76503110 TTCCAGGTTGTTTTCTCCCATTAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTT 76503051 Query 160640 GAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTG 160699 | ||||| || |||| || | ||||||| ||||||||| || || |||| | | Sbjct 76503050 AATGGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATTGCATA 76502991 Query 160700 CAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTT 160759 || ||| ||||||| || | || ||||| || |||||||| || || || || || | Sbjct 76502990 GAGATCCTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACT 76502931 Query 160760 CTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG 160819 ||| | | |||||||||||||| ||| ||||| || |||| |||| ||| | ||| Sbjct 76502930 CTCCAATCGGCTGGCCACAAAGACATTACTAAAACAGGAAGCGATGCCCATCACTG-CAG 76502872 Query 160820 --AAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCG 160877 ||| | | | || | ||| |||||| || | |||||| | ||||||||| Sbjct 76502871 CTAAATAGGA-ATCCTCGGATTTTGTGTCCACATGAATGCAATAGAAATTCTGAGGCATA 76502813 Query 160878 TAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAG 160937 ||||||||||| |||| ||| || | ||| || ||||| ||||| | ||| ||||| || Sbjct 76502812 TAGATGGCCCTCAGCAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATAT 76502753 Query 160938 GCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTG 160997 ||||| |||||||| | ||| || ||| |||| | | || || || ||||| Sbjct 76502752 GCTATTGGAAACTCCGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGTCTCTTG 76502693 Query 160998 ATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 || ||| || ||| || | |||||||| ||||| Sbjct 76502692 ATGAAAGAAGAACAGTCACTGGTCATGTTTATATA 76502658 >seq14 Length=198295559 Score = 165 bits (182), Expect = 9e-36 Identities = 219/304 (72%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 168169 TTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCCTTCGTCCT 168228 |||| || ||||| || | || || || |||||||| |||||| | || ||||| |||| Sbjct 112345267 TTCCTGAGATCTTCCCAAAACCAAAGGTATTGAAGAGACACATGTAACACCCTTCATCCT 112345208 Query 168229 CCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGTTATGTTCA 168288 ||| |||| ||||||| || || | ||||||||| |||| |||| ||| || ||||| | Sbjct 112345207 CCAGGGTGATATTCCAGAAGGTGATGGTTGAGTTTTGGAGTCCCAGCTGGGTAATGTTTA 112345148 Query 168289 CACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGTGGCCATGT 168348 || ||||| | ||| || | || || || |||||||||||||||||| |||||| Sbjct 112345147 TCTTGTCCTTATAGGCAGGCTGGATCACCACCCCATGGTTCTCGCTGAAGGTGACCATGT 112345088 Query 168349 TCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTTATCGGTCT 168408 | || ||||| || || | |||||||| || || || || | || | | | | Sbjct 112345087 TTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAATGAGGGCTTCCTGGGCATTTT 112345028 Query 168409 GCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATCTTGAGTTACGA 168468 |||| || ||| | | ||||| || |||| |||| | |||| ||||| || || || | Sbjct 112345027 GCAGAGAGCATTTTAAGGAAGCAGGTGTGTACAGCTGCTCTCTTTCATCCTGGGTCACCA 112344968 Query 168469 CCTG 168472 | || Sbjct 112344967 CTTG 112344964 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/220 (69%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942 |||||| | ||| || ||||| |||| || || |||| ||| |||||||| || Sbjct 112347819 GTTTGCTTAAAGTCGGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCC---TTC 112347763 Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002 || || ||| |||| || ||||| | || | ||||| || ||| || || ||||| Sbjct 112347762 CCCACCTGATTCTTAGGGTCTTTGATATGGAGGATGCTGGTAACAGACGTGGTCCCATTT 112347703 Query 168003 CGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATT 168062 | || | | || || || || ||||||||||| | | ||||||||||| | Sbjct 112347702 GGGTGAGACAGAGTCACTGTACTATTTTCAATCCCTGACCGAGGGACCTTCCAGAAGACC 112347643 Query 168063 ACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | || || || || || || |||||||| || ||||||| Sbjct 112347642 ATGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATATTTA 112347603 >seq52 Length=64444167 Score = 100 bits (110), Expect = 3e-16 Identities = 234/347 (67%), Gaps = 11/347 (3%) Strand=Plus/Plus Query 160608 TTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTT 160667 || |||| | | || || | |||||| || || | ||||| || ||| || | | | Sbjct 18420749 TTGAGCTTCCTAACAATTT-TAGGTTGGTTTTAATAGGAAAATCCATACTACAAACATGT 18420807 Query 160668 ATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG--GTCCCTCATGCAATTAATATCTG 160725 || | ||||||||| | || |||| |||||| |||||||||||| || | || | Sbjct 18420808 ATTAAGTACTTCCAGTCTGCACTCACT--GTGCAGAGGTCCCTCATGCAGTTGAGGTCAG 18420865 Query 160726 CCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGT 160785 || | || || ||||| | || || || | |||| | | || ||||||||||| || Sbjct 18420866 CCAGAACCCGACTCCACAAGGCATAAACCAGACTCTCCAACTGACAGGCCACAAAGATGT 18420925 Query 160786 TATCGAAACACGACACGATTCCCACCA---CCGCCAGAAAGAACATCTTATCCGCCTTTC 160842 || ||| | ||| | || |||| || | || | |||| | |||| | ||| Sbjct 18420926 TACTGAA--ATGACCCAATGCCCATCACTGCAGCTAAAAAGGA-ATCTGCTGATTTTTTT 18420982 Query 160843 GGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGA 160902 |||||| || | |||||| | ||||||||| |||||||| || | | ||| || | Sbjct 18420983 TGTCCACATGAATGCAATAGAAATTCTGAGGCATATAGATGGCTCTCTGGAGCCTGTCAA 18421042 Query 160903 ACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAAC 160949 | | || | |||| ||| | || ||||| || ||||| |||||| Sbjct 18421043 GCGTTTCAGTTTTATAATGAACCAGTATAGAATATGCTATTGGAAAC 18421089 >seq42 Length=101991189 Score = 84.2 bits (92), Expect = 3e-11 Identities = 194/290 (67%), Gaps = 7/290 (2%) Strand=Plus/Minus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || || || ||||| || || ||| || || ||||| | || ||| || | Sbjct 59619477 GTCAAACTTGTTGGCCAACAGGTGATG---GTTTTGAAGCATCCAATTCAAGTCCCCAGC 59619421 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| | ||||||| | || ||| | || ||| || | || |||| || || Sbjct 59619420 CCCATAAACGCAGATAGCCCGCTGGTGGATTCCAGAGCAGGGAGCATAAGGAGCACCCTT 59619361 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 | | ||| || || | ||||||||| || | |||||| || | |||||| || Sbjct 59619360 ATCGATGTCTCCCTCATGACCCTGCCACTTGACCAGCCTGGCAATAGAAGTCATGTCTGA 59619301 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAA--CGCCGGGCATACGCTGTAGG 160334 | ||||||| ||| |||||| | || || | | ||| ||| ||||| ||| Sbjct 59619300 GATGTCGTACTTGGGGTGGTTGGGAACAGAGCCAGGCATCCACCGTGCA--CGCTGAAGG 59619243 Query 160335 GTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384 |||||||| |||||||| || ||||| || ||||| || |||||| || Sbjct 59619242 GTGGCCCAGAGGTGTTCATCTGGGCTATAAGTGTCTTTTACCCATTCAAT 59619193 >seq18 Length=181538259 Score = 84.2 bits (92), Expect = 3e-11 Identities = 230/351 (66%), Gaps = 6/351 (2%) Strand=Plus/Plus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| ||||| || | || |||||||| ||| || | ||| ||| ||| | ||| Sbjct 22580251 TGTCTCAGATAATCATTCAAACATTGGATGGCAAAGAGGTC---GTCGATGTCAAGCTTA 22580307 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || |||| ||||| | | || ||||| | || ||| || | | ||| | | Sbjct 22580308 TTGGCAAACAAGTGGTGCTTGCAC---AGCATCCATTTCAAGTCACCAGCTCTGAAAATG 22580364 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || | | | ||| | || | | | || ||||| |||| | | | || ||| Sbjct 22580365 CACACCAAGTGCACGTGGTCCCCATCGTAGGGTGGGTAGGGAGCATCCTCAGAAACATCA 22580424 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 || || ||||||||||||| ||||||||||| | || ||| |||| || ||| || Sbjct 22580425 CCCTCCAAGTACTGCCACTTGACAAACCTGGCGACTGCATGCGTGTCAGACAAGTCATAC 22580484 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 || | | | | | ||||| || | || |||| ||| | |||||| || || Sbjct 22580485 TTATGGCTTGTAGAGAGTGAGCCGGGGACTTCAGGAATACTCTGGATGGTGGCTCAGAGA 22580544 Query 160347 TGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATT 160397 || || || |||||||| ||||| | | || ||||| |||| | |||| Sbjct 22580545 TGCTCATCAGGGCTGTATGTGTCTTGTGCTCACTCCATAAACTTTTGGATT 22580595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577215029591280