Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq64 129 9e-25 seq1 87.8 3e-12 >seq64 Length=156040895 Score = 129 bits (142), Expect = 9e-25 Identities = 296/443 (67%), Gaps = 9/443 (2%) Strand=Plus/Plus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 || || ||||||||| ||||||||| || |||||| || | ||| || |||||| Sbjct 44309655 AAGCAAGCAAAATCACAGTGTAAACCCTCTTCTCTGCTAATAAGTTCATTGGAAAACGTG 44309714 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 | || ||||| |||| ||| || ||||| ||||||||||| ||| || ||||||| Sbjct 44309715 AGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAG 44309774 Query 18275 AATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCT 18333 || || || || || ||| || || |||| | | |||| || | | | ||| Sbjct 44309775 AAGATGCCTTCTACTGCA-GCAAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTC 44309833 Query 18334 CAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 | ||||| ||||| ||| | | | ||| || || | || || || Sbjct 44309834 CCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT-TCAATGGC 44309892 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 ||| || | | || ||||||||| |||||| || |||||||| || | | | ||| Sbjct 44309893 ATTGAAGAGAAATTCCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATA 44309952 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 |||||||||||||||| ||||||| || || || || | ||| || | | || || | Sbjct 44309953 CATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGT 44310012 Query 18514 ATATTGA---ATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGC 18570 | ||| || | ||| ||||| || |||||||| ||||| | ||| || ||| Sbjct 44310013 AATCTGAACTATTTGGCT---AAATCGCTCCACCAAATTTTCATTTATTATGCCATCACT 44310069 Query 18571 AGATGCGAAAAATGCCAAAACAT 18593 | ||| || || ||| ||||| Sbjct 44310070 TGCTGCAAAGAAAACCAGAACAT 44310092 >seq1 Length=248956422 Score = 87.8 bits (96), Expect = 3e-12 Identities = 132/185 (71%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470 ||||||||| ||||||||| |||||||| || | | | |||||||||||||||| || Sbjct 161378840 TTTCTTTGGCATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGT 161378899 Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAA--TC-TCGC 18527 ||||||| || || || || ||| || | | || || | | |||| || | || Sbjct 161378900 TTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGC 161378959 Query 18528 TATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCA 18587 | ||||| || ||||| || ||||| ||||| || ||| | ||| || || |||| Sbjct 161378960 T---AAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCA 161379016 Query 18588 AAACA 18592 |||| Sbjct 161379017 GAACA 161379021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731866712224800