Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq64 114 4e-20 seq284 91.5 4e-13 seq46 91.5 4e-13 >seq64 Length=156040895 Score = 114 bits (126), Expect = 4e-20 Identities = 369/565 (65%), Gaps = 7/565 (1%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || ||||| || || || | || || |||||||||||| | || | | | | Sbjct 44310240 TTTGTCATCTTCCCCATCGAGTACCATGATATCTGGCAGATGTATGAGAAGGCGGAGGCT 44310181 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTT 133195 | || ||||| | || || || | ||||| ||| ||||||||| |||| Sbjct 44310180 TCCTTCTGGACCACCGAGGAGGTGGACCTGTCCAAGGACATTCGGCACTGGGAATCCCTG 44310121 Query 133196 ACTGGGGATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGTGATGG 133254 | || || | | ||||||| || ||| || | | || ||||| || |||||||| Sbjct 44310120 AAGCCCGAGGAGAGATATTTTATATCCCATG-TTCTGGTTTTCTTTGCAGCAAGTGATGG 44310062 Query 133255 TATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCG 133314 || | ||||||||| | || |||| | |||||| | | |||||||| Sbjct 44310061 CATAATAAATGAAAATTTGGTGGAGCGATTTAGCCAAATAGTTCAGATTACAGAAGCCCG 44310002 Query 133315 TGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCT 133374 || ||||| | || ||||| |||||||| || |||||| | ||| | || Sbjct 44310001 CTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCT 44309942 Query 133375 AATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT-AGCG 133433 ||||| ||||||||||||||| || | | | | || ||||| |||||| | || Sbjct 44309941 TATTGACACTTACATCAAAGATCCCAAAGAAAGGGAATTTCTCTTCAATGCCATTGAACG 44309882 Query 133434 AATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTG 133493 | | |||||| | || ||||| | || ||||| | ||||| |||||| | Sbjct 44309881 A--TGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAGG 44309824 Query 133494 CGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTG 133553 | | | || | ||| | || || ||||||| |||||| ||||| || || |||| Sbjct 44309823 CTACCTATGGTGAACGTGTTGTAGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCTGGTT 44309764 Query 133554 CGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCT 133612 | || ||| || || || ||||| || || || || | ||||| || ||||| Sbjct 44309763 C-TTTTGCATCGATATTCTGGCTCAAGAAACGAGGACCGATGCCTGGCCTCACGTTTTCC 44309705 Query 133613 AACGAACTTATTTCAAGGGACGAGG 133637 || ||||||||| || || |||| Sbjct 44309704 AATGAACTTATTAGCAGAGAAGAGG 44309680 >seq284 Length=154723 Score = 91.5 bits (100), Expect = 4e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || ||||| || ||||| || || ||||||| ||||| || || Sbjct 122581 ACCAGTCTCAGCAGTCTTGACAGCCGTGTCAATGAGCCCCTCACGACCCCCCATGGCGTG 122522 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 ||| || | ||| ||| || || | | ||||| |||| || || ||||| Sbjct 122521 GAAAAAGAACTCAGTGGGTGTGAGGCCGGCTAGGTAGGAGTTCTCCACAAAGCCACGGCT 122462 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||| ||| | ||| |||| | ||||| ||||| |||| || || |||| |||| Sbjct 122461 CTCAGGCCCGTAGTCATCCTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAAGCCAAATGG 122402 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAA 302839 || ||||| || || |||||||||||||| | | | ||| | ||| |||| Sbjct 122401 AATCCGCTTGCCCTCGACGTTCTGCTGTCCAACGACAGCAATGACCTGGGAAA 122349 >seq46 Length=83257441 Score = 91.5 bits (100), Expect = 4e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || ||||| || ||||| || || ||||||| ||||| || || Sbjct 7502124 ACCAGTCTCAGCAGTCTTGACAGCCGTGTCAATGAGCCCCTCACGACCCCCCATGGCGTG 7502065 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 ||| || | ||| ||| || || | | ||||| |||| || || ||||| Sbjct 7502064 GAAAAAGAACTCAGTGGGTGTGAGGCCGGCTAGGTAGGAGTTCTCCACAAAGCCACGGCT 7502005 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||| ||| | ||| |||| | ||||| ||||| |||| || || |||| |||| Sbjct 7502004 CTCAGGCCCGTAGTCATCCTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAAGCCAAATGG 7501945 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAA 302839 || ||||| || || |||||||||||||| | | | ||| | ||| |||| Sbjct 7501944 AATCCGCTTGCCCTCGACGTTCTGCTGTCCAACGACAGCAATGACCTGGGAAA 7501892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471806700270786