Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq46 86.0 5e-12 seq31 86.0 5e-12 >seq46 Length=83257441 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || || || ||||| | || ||||| ||||| ||| | || |||| | Sbjct 16381905 AAAATGCAGATCTTCGTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAGCCC 16381964 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 | || || ||| | || || ||||| ||||| |||||| | ||| || Sbjct 16381965 AGTGACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGAC 16382024 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||||| || || | ||| || || |||||||| || | | || | | |||||| Sbjct 16382025 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCTGACTAC 16382084 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || |||||||| || ||||| |||| || | || |||| || Sbjct 16382085 AACATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGG 16382134 Score = 86.0 bits (94), Expect = 5e-12 Identities = 156/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| ||| | ||| |||| | | Sbjct 22204549 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 22204608 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| |||||||||||| | ||| | ||||| Sbjct 22204609 GACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCCCCG-ATCAG 22204667 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || |||||||| || | | || | | ||||||||| Sbjct 22204668 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCGGTACTCTTTCTGACTACAAC 22204727 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||| || ||||| |||| || | || |||| || Sbjct 22204728 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGG 22204774 >seq31 Length=133275309 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || || || || | || || || ||||| ||| |||| |||| | | Sbjct 124911947 ATGCAAATCTTCGTGAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTGGAGCCCAGT 124911888 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || |||||| ||||| |||||| | || |||||| Sbjct 124911887 GACACCATCGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGCATCCCTCCTGATCAG 124911828 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACTA 107731 ||||| | || | ||| || ||||||||||| |||||| || || | ||||| Sbjct 124911827 CAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGC----ACCCTGTCTGACTA 124911772 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||| || || ||||| || ||||| |||| || | ||| | ||||| Sbjct 124911771 CAACATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGGGG 124911721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398873990162242