Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq64 105 5e-18 seq44 102 6e-17 seq52 98.7 8e-16 seq14 96.9 3e-15 seq1 96.9 3e-15 seq46 95.1 9e-15 seq20 84.2 2e-11 >seq64 Length=156040895 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 ||||| | |||||| || | || ||||||||||| | || | | || || ||| Sbjct 3717361 CAGCAAAAGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCATC 3717302 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| |||||||||||| || ||||| || || || || Sbjct 3717301 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 3717242 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| | || || |||| || ||||| || || || Sbjct 3717241 CTGGATCTTGGCCTTTACATTTTCTATCGCATCTGAGGGTTCAACCTCAAGGGTGATGGT 3717182 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || ||| |||||| || || ||||||| ||| Sbjct 3717181 CTTCCCCCTTAGGGTTTTCACGAAAATCTGCAGTTT 3717146 >seq44 Length=90338345 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || |||||||| || || || | | || || ||| Sbjct 61055702 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 61055761 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || ||||||||| | |||| ||| |||||||| || ||||| || || || | Sbjct 61055762 TTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTACC 61055821 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || |||| || || || || || || Sbjct 61055822 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 61055881 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| || || ||||||||||| Sbjct 61055882 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 61055917 >seq52 Length=64444167 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/217 (71%), Gaps = 15/217 (7%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA-AT 29632 || ||| | |||||| || || || ||||||||||| || || ||| || Sbjct 37049455 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTC------------AGACAT 37049408 Query 29633 CATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692 | || ||||| ||||||||| |||| | ||||||| |||| || ||||| || || || | Sbjct 37049407 CTTCCAGTTGCTTGCCAGCAAATATTAGTCTTTGCCGATCAGGAGGAATTCCTTCCTTAT 37049348 Query 29693 CTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 | || || || || || ||| ||||| || || || |||| || | || || || Sbjct 37049347 CCTG-GATCTTGGTCTTTACATTTTCTGTCGTATCCGAGGGTTCAACCTTGAGGGTGATG 37049289 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTT 29788 ||||| || || | |||||| || || |||||||||| Sbjct 37049288 GTTTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTT 37049252 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || ||||||||||| || || | | | | ||| Sbjct 17517055 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGCACATCCATC 17516996 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| |||| |||| | |||| ||||| |||||| || ||||| | || || || Sbjct 17516995 CTCCAGTTGCTTGCTAGCAAAGATCAGTCTTTACTGATCAGGAGGAATTCTTTCCTTATC 17516936 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || || || | | |||||| || || || |||| || | || || || || Sbjct 17516935 CTGGGTCTTGGCCTTTATATTTTCTATCGTATCTGAGGGTTCAACCTTGAGGGTGATGGT 17516876 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| ||||| ||||||||||| Sbjct 17516875 CTTCCCTGTGAGGGTTTTCACAAAAATCTGCATTTT 17516840 >seq14 Length=198295559 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||||||||| || || ||||| ||||| ||||| | || | | || || | Sbjct 27486460 CGCAGCACCAGGTGCAGGGTGGACTCTTTCCAGATGTTGCAGTCTGAGAGAGTTCGGCCA 27486401 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || |||||||||||| ||||| ||||| || || || ||| |||| ||| Sbjct 27486400 TCCTCCAGCTGTTTGCCAGCAAGTATCAGATGCTGCTGGTCAGGTGGGATA-CCTCCTTG 27486342 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| |||||| | ||||||| | || | |||||| | | || |||||||| || Sbjct 27486341 TCTTG-AATTTTGGCTTTGACATTCTCAATGGTGTCACTTGGCTTGACGTCAAGAGTGAT 27486283 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGC 29784 || ||||| || | ||| || ||||| |||||| Sbjct 27486282 GGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGC 27486249 >seq1 Length=248956422 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || |||||||| || || || | | || || ||| Sbjct 192716395 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 192716336 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || | || ||||||||| | |||| ||| |||||||| || ||||| || || || || Sbjct 192716335 TTCCAACTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 192716276 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| | |||| || || || ||||| || || || || || || Sbjct 192716275 CTGGATCTTGGCCTTTACATTATCTATTGTATCCGAGAGTTCAACCTCGAGGGTGATGGT 192716216 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || | | |||||| || || ||||||||||| Sbjct 192716215 CTTCCCCATAAGGGTTTTCACGAAAATCTGCATTTT 192716180 >seq46 Length=83257441 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| |||||| |||| || || || || || || || ||||| || || | | Sbjct 16382134 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 16382075 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || || || ||||| ||| | || | || ||||| || || ||| Sbjct 16382074 AGAGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 16382015 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || | || || ||| |||| | |||||| | || || Sbjct 16382014 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 16381955 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || || ||||| || | |||||| || || ||||||||||| Sbjct 16381954 TCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTT 16381905 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| |||||||| || || ||||||||||| || || | | | || | ||| Sbjct 10258974 CAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGACAAAGTACATCCATC 10258915 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | ||| |||||||||||| || ||||| || || || || Sbjct 10258914 TTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 10258855 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | | || ||| |||||| || || | |||| || | || || | || Sbjct 10258854 CTGGATCTCGGCCTTTACATTTTCTATCGTATCCAACGGTTCAACCTTGAGGGTGGTTGT 10258795 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| || || ||||||||||| Sbjct 10258794 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 10258759 >seq20 Length=170805979 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || |||||||| | || || | | || | ||| Sbjct 113581713 CAACACAAGATGAAGAGTAGACTCCTTTTGAATACTGTAGTCAGACAAAGTACATCCATC 113581654 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| || |||||| | |||| |||||||||||| || ||||| || || || || Sbjct 113581653 TTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 113581594 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || | |||| | || || || || || Sbjct 113581593 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAGCCTCGAGGGTGATGGT 113581534 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | || | |||||| | || ||||||||||| Sbjct 113581533 CTTCTCCGTAAGGGTTTTCAAGAAAATCTGCATTTT 113581498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385216486371498