Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq11 93.3 4e-14 seq21 84.2 2e-11 >seq11 Length=242193529 Score = 93.3 bits (102), Expect = 4e-14 Identities = 130/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | || |||||| | ||| | |||||| |||| ||||| ||| Sbjct 10441693 TCCAGCATATGGGGACCAACATGTGATGGCCTCGATCGGATTGTTGAGCGCTGTGACCTG 10441634 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || || | || ||||| || ||| | | |||||||||||||||||||||| || | Sbjct 10441633 CCTGAAATGCATGTGGGTGATTGGATGCTCTTTGAAAACATGGGCGCTTACA-CTGTTGC 10441575 Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGC-ACTATGTTATTTCAG 21296 ||| | || || || || ||||| ||| || | || | | ||||||| || |||| Sbjct 10441574 TGCTGCCTCTACGTTCAATGGCTT-CCAGAGGCCGACGATCTACTATGTGATGTCAG 10441519 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 20372 GAGATTCAGTTACTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCT 20431 || || ||||| |||| | |||||| || | |||| ||||| | | ||| |||||| Sbjct 10444264 GAAATACAGTTGGTGCAGAGTCTGGGGGTGCCTCCAGAGAGGATTATCTATGCAAATCCT 10444205 Query 20432 TGTAAGCAGCCTTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTT 20491 ||||| || || || || | |||||| ||| | | |||||| | ||||||||||| Sbjct 10444204 TGTAAACAAGTATCTCAAATTAAGTATGCTGCTAATAATGGAGTCCAGATGATGACTTTT 10444145 Query 20492 GATAGTGAAGAAGAGCTTACCAAAATTG 20519 |||||||||| ||| | | ||| ||| Sbjct 10444144 GATAGTGAAGTTGAGTTGATGAAAGTTG 10444117 >seq21 Length=159345973 Score = 84.2 bits (92), Expect = 2e-11 Identities = 198/298 (66%), Gaps = 6/298 (2%) Strand=Plus/Plus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | ||| || || ||| |||| ||| | ||| |||| | |||| | | || | Sbjct 129029007 ATGCCTTCTATGTCATGGACCTTAGAGACATTCTAAAGACACATCTAAGATAGTTAAAAG 129029066 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCAGAACGACGAGAGAGTCCTCA 20324 || | ||| | |||| || ||||| || || || | || ||| |||| | ||| Sbjct 129029067 CTCTTCCTCATGTCACCCCCTTTTATGCAGTCAATT---ATAATGACAGCAGAGCCATCA 129029123 Query 20325 ---AGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGT 20381 |||| || |||||| | || || ||||||||||| || ||| || || || | Sbjct 129029124 TGAAGACTCTTGCTGCCATCGGGACAGGATTTGACTGTGCTAGCAAGGCTGAAATACAAT 129029183 Query 20382 TACTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGC 20441 | |||| | |||||| | | | |||| ||| | | | ||| ||| ||||||| || Sbjct 129029184 TGGTGCAGATTCTGGGGATGCCCCCAGAGAGGTTTATGTATGCAAATTCTTGTAAACAAA 129029243 Query 20442 CTTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGA 20499 || || || | ||| | || | | |||||| | |||||| ||| | || ||| Sbjct 129029244 TGTCTCAAATTAAGTACACTGCCAATAATGGAGTCCAGATGATGATTTTCGGTAATGA 129029301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463542250883040