Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq23 201 1e-46 seq14 194 2e-44 seq20 136 5e-27 >seq23 Length=138394717 Score = 201 bits (222), Expect = 1e-46 Identities = 602/921 (65%), Gaps = 11/921 (1%) Strand=Plus/Minus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 || |||| | || ||| || | |||||||| || || | ||| ||| | || ||| Sbjct 76503643 TTGTGTCTCAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAAC 76503584 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 || || || |||| ||| || || || ||||| || | || || | |||||| Sbjct 76503583 TTATTGGCAAACAAGTGGTGT---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCGAAA 76503527 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 | |||||| || ||||| || || || ||| ||||| || | || || | | ||| Sbjct 76503526 ATGCACACTGAGCGCACATGGACTCCATCGCAGGGCGGGTAGGGAGCACCCTTGGAAACA 76503467 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || ||||| |||| |||||||| || ||||| | | || |||||||| || || Sbjct 76503466 TCACCCTCAAAGTACTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAGATCA 76503407 Query 162307 TACTTGTACACTGAC-GGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 ||||| | ||| | || | | || || || | || | || || | || ||||| Sbjct 76503406 TACTTATGG-CTGGCAGGGAGTGAGCCCGGGACTTCAGGAATCCTTTGGATGGTGGCCCA 76503348 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 || | || || || || || || || | | ||||||||| |||| || ||| Sbjct 76503347 GAGATACTCATCAGGGCTGTATGTGTCTTGTGCCCACTCCATCAACTTTTGGATTTTTTC 76503288 Query 162426 ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAA 162485 || | ||| | || || || ||| | || | ||||| || || |||||||| Sbjct 76503287 ATTCTGTAGTACATACCCCACATACTCCCTACTGACCACGAAGTAGGCACTGCCAGAAAA 76503228 Query 162486 CACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545 | ||| | | ||||| || |||| | || ||||| | | |||| | Sbjct 76503227 GAGAGGTGTTTCGAGTGGAGGAAGCATTTTGACAGTCCCTGTGTTTGTCAGCTTTCCATT 76503168 Query 162546 TACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTA-GACGGGTGTTCGGTCT 162604 |||||| | | | |||| ||||||| | |||| ||| | | | || || | Sbjct 76503167 AACGACCTCATACCGCTTCTTCCACCTTTCT-TCTTTATGGGATGGCATCCTCTCCGTTT 76503109 Query 162605 CTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAA 162664 | || |||| ||| || ||| |||| | || || ||||| ||||| |||| Sbjct 76503108 CCAGGTTGTTTTCTCCCATTAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAA 76503049 Query 162665 GGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACA 162724 |||||| || | || || ||||| || | || ||||| || | || | | | || | Sbjct 76503048 TGGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATTGCATAGA 76502989 Query 162725 GATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCT 162784 |||||| | ||||| || || ||||| || || |||||||| || || || || |||| Sbjct 76502988 GATCCTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCT 76502929 Query 162785 CCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTG 162844 |||| | |||| ||||||||||| ||||| ||| | || |||||||| || | Sbjct 76502928 CCAATCGGCTGGCCACAAAGACATTACTAAAACAGGAAGCGATGCCCATCACTGCAGCTA 76502869 Query 162845 AGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTA 162902 | | ||| || | ||| | || || || | ||| || | ||||||||| || Sbjct 76502868 AATAGGAATC--CTCGGATTTTGTGTCCACATGAATGCAATAGAAATTCTGAGGCATATA 76502811 Query 162903 GATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGC 162962 |||||||||||| | || || | ||| || ||||| || || ||||| |||||||| || Sbjct 76502810 GATGGCCCTCAGCAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATGC 76502751 Query 162963 TATGGGGAACTCAGCCTCCTC 162983 ||| || ||||| ||||| || Sbjct 76502750 TATTGGAAACTCCGCCTCTTC 76502730 >seq14 Length=198295559 Score = 194 bits (214), Expect = 2e-44 Identities = 238/325 (73%), Gaps = 0/325 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 |||||| || || |||| | | || || || || || | ||||| ||||| || | || Sbjct 112345288 CATAGACGGTGAGGCAGGCCGTTCCTGAGATCTTCCCAAAACCAAAGGTATTGAAGAGAC 112345229 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| ||||| ||||||| |||| | ||||| || || | || || ||| || Sbjct 112345228 ACATGTAACACCCTTCATCCTCCAGGGTGATATTCCAGAAGGTGATGGTTGAGTTTTGGA 112345169 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || |||||||| | | |||||| || | |||||||| || || || || | Sbjct 112345168 GTCCCAGCTGGGTAATGTTTATCTTGTCCTTATAGGCAGGCTGGATCACCACCCCATGGT 112345109 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||||| ||| |||||||||| ||||| ||| || | |||||||| || || | Sbjct 112345108 TCTCGCTGAAGGTGACCATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAA 112345049 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | | |||| | | | |||| ||||||||| |||| ||||||||||||| || | Sbjct 112345048 TGAGGGCTTCCTGGGCATTTTGCAGAGAGCATTTTAAGGAAGCAGGTGTGTACAGCTGCT 112344989 Query 172071 CCCTTTCGTCTTGCGTTACCACCTG 172095 | ||||| || || || ||||| || Sbjct 112344988 CTCTTTCATCCTGGGTCACCACTTG 112344964 Score = 107 bits (118), Expect = 2e-18 Identities = 160/224 (71%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 || ||||| | | ||| || |||||||||| ||| | || | ||| |||||||||| Sbjct 112347822 ACGGTTTGCTTAAAGTCGGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCCT-- 112347765 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| ||| | ||||| ||||| | || || ||||| |||||||| || ||||| Sbjct 112347764 -TCCCCACCTGATTCTTAGGGTCTTTGATATGGAGGATGCTGGTAACAGACGTGGTCCCA 112347706 Query 171623 TTACGATGTAGAACG-GTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAA 171681 || | || ||| | || ||||||||||| || || || | | || ||||| || Sbjct 112347705 TTTGGGTG-AGACAGAGTCACTGTACTATTTTCAATCCCTGACCGAGGGACCTTCCAGAA 112347647 Query 171682 TATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 | | || ||||| | ||||| ||||||||||| || |||| Sbjct 112347646 GACCATGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATATTTA 112347603 >seq20 Length=170805979 Score = 136 bits (150), Expect = 5e-27 Identities = 435/664 (66%), Gaps = 17/664 (3%) Strand=Plus/Minus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | |||||| |||| | || || | | | Sbjct 96204110 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCGACTTCCTTCAGATACTTTG 96204051 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 96204050 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 96203991 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| ||| || || | ||||| | || |||| || || Sbjct 96203990 TCTCATAGTTTTCCCTAGATGGTCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCAT 96203931 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 ||| || ||||| || || || ||| |||| | || || ||||| | ||||| |||| Sbjct 96203930 TGTATAGCTTTTCCGTGATGTAATCCTTGTGGATTGAATTTTCAAAGGAAAGATAAAATT 96203871 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 |||| | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 96203870 TACAAGTAGATATGGTA--GGAATCAAATTTTTATCATTGACATATTCTCCAAATGCTTG 96203813 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 |||||| ||| || || ||| ||| || ||||| ||| || || || ||| | | Sbjct 96203812 CCCGTAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACTCTGGCAT 96203754 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| || || || |||||||| || || Sbjct 96203753 GCTCAGGGTTCCAGTTACTCACAACCCAGCACACCAA-TTTCTCTTTGCTTGGCAC---- 96203699 Query 177303 TTC-GATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | || || | | | || | ||| | | ||||| ||||| || ||||| || Sbjct 96203698 TTCAAACACGAAGGGATTTGTGCTTACCGTCAAGAAGCCATAAGGCACTTGGATATCTGA 96203639 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGG 177419 || || | ||| || | || || || || | || || || | || |||| ||| Sbjct 96203638 ATCACGGCGGTAAGTCAGAGTCAGGTTAAACAAGTGCTCAATGCCACTCTTTTG--GGGA 96203581 Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCC 177479 ||| | | || ||||| || |||||||| ||||| || || |||| ||| || | || | Sbjct 96203580 GTGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTAGCTTGC 96203521 Query 177480 GTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCT 177539 ||||| | | |||| ||| || |||| ||| || | | || |||| || | Sbjct 96203520 TGAGGTAAATTTGTCAGATCCCAACTGATGTCTCGGTGATGGATCAGAACTGCATGGGAT 96203461 Query 177540 TTGT 177543 |||| Sbjct 96203460 TTGT 96203457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578427820828800